G333787


Basic Information

Item Value
gene id G333787
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17667636 ~ 17667844 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395303
aaaaataaacaggcCGGCGTGCAGGAAGAGCTGCTGCTACTGGAGCACAACACAATATTtacactacaatacacactcttctctctgccacttacacacacacacactcacacacacacacagagtaaaggAGGAGAAACTGATGCTTTGTTCTATTTGCTTTCAATGGACATTAAACAAATCTATCATACTTGAGTTGTGACACTTCG

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU395303 True 209 lncRNA 0.42 1 17667636 17667844

Neighbor

gene id symbol gene type direction distance location
LOC113541191 cfap44 coding upstream 14023 17636383 ~ 17653613 (+)
spice1 spice1 coding upstream 38151 17621946 ~ 17629485 (+)
atp8a2 atp8a2,LOC108438947,LOC107654223,LOC107716405,LOC107584968,LOC107732915 coding upstream 62443 17543823 ~ 17605193 (+)
gpr12 gpr12,LOC107701646,LOC107716385,LOC107654195,LOC107705188 coding upstream 163933 17496077 ~ 17503703 (+)
usp12a usp12,usp12a,LOC107705210,LOC107584971,LOC107591222,LOC107654221 coding upstream 175318 17483693 ~ 17492318 (+)
boc boc coding downstream 11054 17678898 ~ 17706118 (+)
atp6v1ab atp6v1a,atp6v1ab,LOC107599937,LOC107687683,LOC107591235,LOC107716398,LOC107654231 coding downstream 60009 17727853 ~ 17739585 (+)
chodl chodl coding downstream 274584 17942428 ~ 17951626 (+)
zgc:112408 zgc:112408,LOC108256202,LOC108438348,LOC107721840 coding downstream 293144 17960988 ~ 17963471 (+)
lipib LOC108256469,LOC108438884,LOC107721863,LOC107705251,LOC107590204 coding downstream 305360 17973204 ~ 17983420 (+)
G333582 NA non-coding upstream 220593 17446185 ~ 17447043 (+)
G333548 NA non-coding upstream 304561 17362871 ~ 17363075 (+)
G333360 NA non-coding upstream 480961 17186129 ~ 17186675 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding upstream 769781 16893006 ~ 16897855 (+)
LOC113541357 NA non-coding upstream 777475 16888906 ~ 16890161 (+)
G333791 NA non-coding downstream 2572 17670416 ~ 17670625 (+)
G333779 usf3 non-coding downstream 39878 17707722 ~ 17712380 (+)
G333795 NA non-coding downstream 73557 17741401 ~ 17756282 (+)
G333797 NA non-coding downstream 88481 17756325 ~ 17756542 (+)
G333798 NA non-coding downstream 88714 17756558 ~ 17756798 (+)
rnf6 rnf6,LOC106590444 other upstream 125249 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 365632 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 557609 17100164 ~ 17110027 (+)
G332636 NA other upstream 2100973 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 2352668 15134353 ~ 15314968 (+)
pan3 pan3,LOC107705213 other downstream 93687 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 318918 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 647510 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 800034 18467878 ~ 18486009 (+)
G334373 NA other downstream 1025305 18693149 ~ 18717953 (+)

Expression


Co-expression Network