G333795


Basic Information

Item Value
gene id G333795
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17741401 ~ 17756282 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395312
ttttagtgttatttttttagatttttataaatttttcaaatatttttataaatttgatataaaactattaaaaatacaataaatttatttttgtagacataaatcatcaaacattttttaaaatgcaaaacttACTCTATTGCTGGCGGTTTGTGAACAAACCTATAAATCATGataaatattgtgtattgtagaaatgctTTTGAGAatcatgatgtgatattttagccatatcgcccagccctgaCGGTAACTGTACTGAGTGTAGCCTTAAGTATTTTTAATGGTAAGTAattatttctctgtctgtggtTTCAGTGTGGCAGGACGAATCTGACACCGATGACTGATGTGCTTCTTCTTTTACTATTTCATGAGGTTCTGAGGTCACTGGAGCATTTTGGTACACTGAGTCACCGCTTTTCTGCCCTTGGATATTATAGTAGAGCTGCAGGAACACATCAAACCCATCAGTGGCATTAGGAGAAAAGATAAATTTCACTGCAAACCCAGAGAGAAGATCTCCCAGAGCAGGATGCCATAGGCCCAGACGTCACTCTCCATGGTGTACATCCCTTTAAAAATACTCTCCGGGGCCATCCACTTCACTGTACCTCGGTGTGGTTGTTGAAGTACCACTTCATGGAAAGGTTGctgttttcatcattttttttacactggagtgagagagactgaCCAGGACGCAGCAGAATCTGAGGAGCCTCACTTTTCAGCATGGCACTGTCAAGGTCTAAAACGTAAGAGAAAGAAACTTGTATCCTGGATGCTTTATTACAATGGATAAAATCAACGGTACAATTTCCACTAATAACCATCCAC
>TU395313
tgaatttcctgaagatcatgggaagatgAAAATGTGGCAGGACGAATCTGACACCGATGACTGATGTGCTTCTTCTTTTACTATTTCATGAGGTTCTGAGGTCACTGGAGCATTTTGGTACACTGAGTCACCGCTTTTCTGCCCTTGGATATTATAGTAGAGCTGCAGGAACACATCAAACCCATCAGTGGCATTAGGAGAAAAGATAAATTTCACTGCAAACCCAGAGAGAAGATCTCCCAGAGCAGGATGCCATAGGCCCAGACGTCACTCTCCATGGTGTACATCCCTTTAAAAATACTCTCCGGGGCCATCCACTTCACTGGTAATCGAGCCTTTAATGAACAAAGTAAAAGTGAGAATTAAGTGAAAGTGTG

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU395312 True 840 lncRNA 0.37 3 17743278 17756282
TU395313 False 377 lncRNA 0.44 3 17741401 17745040

Neighbor

gene id symbol gene type direction distance location
atp6v1ab atp6v1a,atp6v1ab,LOC107599937,LOC107687683,LOC107591235,LOC107716398,LOC107654231 coding upstream 1816 17727853 ~ 17739585 (+)
boc boc coding upstream 35283 17678898 ~ 17706118 (+)
LOC113541191 cfap44 coding upstream 87788 17636383 ~ 17653613 (+)
spice1 spice1 coding upstream 111916 17621946 ~ 17629485 (+)
atp8a2 atp8a2,LOC108438947,LOC107654223,LOC107716405,LOC107584968,LOC107732915 coding upstream 136208 17543823 ~ 17605193 (+)
chodl chodl coding downstream 186146 17942428 ~ 17951626 (+)
zgc:112408 zgc:112408,LOC108256202,LOC108438348,LOC107721840 coding downstream 204706 17960988 ~ 17963471 (+)
lipib LOC108256469,LOC108438884,LOC107721863,LOC107705251,LOC107590204 coding downstream 216922 17973204 ~ 17983420 (+)
ythdf3 ythdf3,LOC107666630,LOC107705256 coding downstream 331365 18087647 ~ 18097915 (+)
bhlhe22 bhlhe22 coding downstream 458581 18214863 ~ 18217206 (+)
G333779 usf3 non-coding upstream 29021 17707722 ~ 17712380 (+)
G333791 NA non-coding upstream 70776 17670416 ~ 17670625 (+)
G333787 NA non-coding upstream 73557 17667636 ~ 17667844 (+)
G333582 NA non-coding upstream 294358 17446185 ~ 17447043 (+)
G333548 NA non-coding upstream 378326 17362871 ~ 17363075 (+)
G333797 NA non-coding downstream 43 17756325 ~ 17756542 (+)
G333798 NA non-coding downstream 276 17756558 ~ 17756798 (+)
G333799 NA non-coding downstream 1442 17757724 ~ 17757929 (+)
G333801 LOC108256577,LOC108442200 non-coding downstream 93513 17849795 ~ 17850795 (+)
G333937 NA non-coding downstream 148671 17904953 ~ 17905225 (+)
rnf6 rnf6,LOC106590444 other upstream 199014 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 439397 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 631374 17100164 ~ 17110027 (+)
G332636 NA other upstream 2174738 15566175 ~ 15566663 (+)
si:ch73-173p19.2 LOC108256301 other upstream 2475506 15251635 ~ 15265895 (+)
pan3 pan3,LOC107705213 other downstream 5249 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 230480 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 559072 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 711596 18467878 ~ 18486009 (+)
G334373 NA other downstream 936867 18693149 ~ 18717953 (+)

Expression


Co-expression Network