G333801 (LOC108256577,LOC108442200)


Basic Information

Item Value
gene id G333801
gene name LOC108256577,LOC108442200
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17849795 ~ 17850795 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395321
aCGAGGTTATTAGTGCAGTGTCTGACTTTTCTAAAGTTAGGACTAACGTTTAAAAAAGGTTCCAGCCTTAcctttataaaattatacaacaAGCCTGATGAATACACATCACTATCGTCTTTAACATACGCTGATGTGGTGAACAGAATGATACAAAATGTCATACAAGCAGCACCGTTACCACAccagcaacacacaaacacacagagcatgAACACTTTTGGTACCaaaaactcacacacaatctctcaccacacacacgcgcgcacgcacacacacacacacacacacacactcagacagagagacagacagacagacattcaTTTGTTGTTCTCTGTTGTCCTTCACATTGGCACCGGGGCTGTATGAGGAACTTCTTCATATCATTATTTAAAGaatatcaagtttttttttttttcctggtcatTTCCGGAAAAAGGAGTTGCGCGTGAACGTGTACCACAGATGTGCAGGTTTCCTCTTGGGTTCTGCTAAAGAGAAGACCTGCTGCTGGGGGATACTGGTTGGTACAGTGATGTGGCGCTGGTGGATAGGGTGTAAGGGTTGGTGATGATGAGACACTGGGTGACCTGCGTATTTTATATCTTTTATTTTGCCCTGCTTTGATTTTCTGGCATTTTGAATCGCTTGCTTCCTTTGGGCTTCGCTAATCTCCATacctgtgagagagaaaaggaacaGTTCATTATATCCCACAGGGgatttatattatttcttatttataccacagcactgttcaaGTCTCCATTCTgtttgttcagaaggtgttgattaattttctttaacagtagGGCAGGTTTAAGAATGATCTAATAcatcatcatttttatcattCGTAACCTTTTAcagtgacttgtatggtggatgctccacacaATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395321 True 904 lncRNA 0.41 2 17849795 17850795

Neighbor

gene id symbol gene type direction distance location
atp6v1ab atp6v1a,atp6v1ab,LOC107599937,LOC107687683,LOC107591235,LOC107716398,LOC107654231 coding upstream 110210 17727853 ~ 17739585 (+)
boc boc coding upstream 143677 17678898 ~ 17706118 (+)
LOC113541191 cfap44 coding upstream 196182 17636383 ~ 17653613 (+)
spice1 spice1 coding upstream 220310 17621946 ~ 17629485 (+)
atp8a2 atp8a2,LOC108438947,LOC107654223,LOC107716405,LOC107584968,LOC107732915 coding upstream 244602 17543823 ~ 17605193 (+)
chodl chodl coding downstream 91633 17942428 ~ 17951626 (+)
zgc:112408 zgc:112408,LOC108256202,LOC108438348,LOC107721840 coding downstream 110193 17960988 ~ 17963471 (+)
lipib LOC108256469,LOC108438884,LOC107721863,LOC107705251,LOC107590204 coding downstream 122409 17973204 ~ 17983420 (+)
ythdf3 ythdf3,LOC107666630,LOC107705256 coding downstream 236852 18087647 ~ 18097915 (+)
bhlhe22 bhlhe22 coding downstream 364068 18214863 ~ 18217206 (+)
G333799 NA non-coding upstream 91866 17757724 ~ 17757929 (+)
G333798 NA non-coding upstream 92997 17756558 ~ 17756798 (+)
G333797 NA non-coding upstream 93253 17756325 ~ 17756542 (+)
G333795 NA non-coding upstream 93513 17741401 ~ 17756282 (+)
G333779 usf3 non-coding upstream 137415 17707722 ~ 17712380 (+)
G333937 NA non-coding downstream 54158 17904953 ~ 17905225 (+)
G333938 NA non-coding downstream 56571 17907366 ~ 17907681 (+)
G333966 NA non-coding downstream 162132 18012927 ~ 18015594 (+)
G333953 eif1axb,EIF1AX,LOC102359197,LOC106603066,LOC107726370,LOC105905255 non-coding downstream 170944 18021739 ~ 18026962 (+)
G334005 NA non-coding downstream 193029 18043824 ~ 18045177 (+)
pan3 pan3,LOC107705213 other upstream 53274 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 307408 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 547791 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 739768 17100164 ~ 17110027 (+)
G332636 NA other upstream 2283132 15566175 ~ 15566663 (+)
G333943 LOC108256468 other downstream 135967 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 464559 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 617083 18467878 ~ 18486009 (+)
G334373 NA other downstream 842354 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 861253 18712048 ~ 18747477 (+)

Expression


Co-expression Network