G333932


Basic Information

Item Value
gene id G333932
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17899839 ~ 17902383 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395479
aatttttgttttattccctttttaTTGCAAGGTTGTCAATGCCTATTTACTGTTACTGGTGAGAAAGTATAACAAGCTCCATCGGGAAAAGGCCCTTTTTGTTGATTCATATGAAATTACACAGATCTGGAATTGTGGGAAGTCCAAATTAAAGATATGTGAACGGATGTATAAGACTGTATTTAATAGGAGAAACTCCAACATATAATATTAGAACATTATGGTAACTAATAGTGCAgcttaattaatgtttattgttttatatttcagcATGATCCTGAAAAGTATTAAGTAATTTTGGGTGAATGGGTGGAAGATTTTTCGTGGTGGAAATGAAGTCGGAGATATAAGTTTTGTTCGTCTTGACCCAAGGATTCCAAATATATAAGACAATGGAATCTGTGATGAACGGTTCAAAATTTATGgtcatttttgtacatttttttgttttgatcactGTAGCACCACTGCTTAGCCGATCAGGGTGAGACTTTGCACCACTGGAGACTGGTGGAGTACTAGCATCCCTCAAAATTTCATGTCTTTAGGCCTTACGGTTTGGTCTGcaagattcaattcaattttatttatatggcgattttaacaatggacattgtcaccaagcagctttatagaaataaatacattcaggatataaatcgTAAAATGTATGAttgtatgaatgtatgaatttatccctaatgagcaagccagaggtgatggtggtgaggaaaacctccctgagacggtatgaggaagaaagcttgagaggaaccagactcaaaggggaaggggaacccatcttcatcaTCCTGGGTGacgcaattataaataattctcttctataactgtgtactacatggacataTGGACATAAGacttcacatgaagtctggtttgctgaacctatccactgtccactgatggagacctgagtgcaaaactgctcacagcaaccgcagccccaaagccaccacagcaatcacagtcccaagccatcacagtacaactgcccattTGAACCGCGgtccagaagtagggcatcaggatggatcaggcaggtcctgaAAGCAAAAGGtttcaggatcactggtatctcaggagtagcatgtgtagctcgacatagggagagagagacagagggaaagagagggagagattgttaggtatgctttttgtcccataatggttaaggacaatgtactttgcatgcagagtgtaAGCAGGGACtacagcaagactagctatggcagcataactaaaagggagagccagaaggtaacacagacatgagggcacccggGGACATAAAGCGGGCaaccactccaccatcaacaaacctgagtgaacgtgagGGGTGGGGGTACAGCATCCAGCATCCAGGGGGACAGCATCCAGTCCAGAAATGTATTACAGTCCTCATCTGTAACTCATATTGAGACAAATGGCTGATCATTTAGAATTTGCCCCCCGAACATCAGAAATTCATGAAATTTGGCAATTTTCTGAGACTGTCCTGTTATCCATGTGTACCAAGTTTCATAAAGTTTGGACATTGCATTCACAAGATATAAGCCAATTAGTTATTATATATCACACCTACAAATATATGGGCCTATATATCTGGAGTATCTCGAGATGGTGCATACCTAATTTTATGtgaatcagacaaaaaaaagagttctAAGTCTTTAGTAAgacattttgatttgacgtTATTAGCTGCTGAATGTTGATTGGCTGCTGCTGTTGATTTGTCCAAatcatatttaatgaaatttgaaaaaaaaaaaaaaaaaaaaaaacaattacctTTATAGTAAGTTTAAAAGTAGtaattttttgttattcatATGCACCTGCATTCACCAGTTTGCCAAAAGCACCATAATGTTAATATCACCATAAATTATAGAGAGAGTGTTGAATGTGATGCTCGCTCTgctattttaccattttaccaTTTTTGCCATGTGCCAGGATCTTTGTGCTGCAATCCGTTGGGGAAACTCAGCCCTGGTCATTTAATAATAGAAGACCTCCATCTGGTCAATATCAGTAAGAGCATTTGTGTTTCATCAGGAGTGTTTTCCCATATGAACATGTTTATTACAGAGAAATAAACCAAGGGAAGTCCACAGTTTCTTCACTGAACATATACACAGTCcactctgaaagtattggaacagcaaagccagttctgttgtttttgctatacactgaagacatttggatttgagattaaacgatgaatatgagatgaaacatcacaatttcagctttcatttcctgatacttACATCTAGATGCGTTGAACATCTTAATACACCACCTCTGATGGCAGACCACCCAGTGTTTATGTGAGCAAAAGTAAgcagtcttaaagtaaataaaagtaaataacacttaccATTTGGTTGCATATCGTTAGCTAGGCTACGACGCgcgttatttattcatttatttttgttttatatgtttgttttttgtttgttttcgtTTTGTTTTAATGTCTTTTGCAATTAGCTGCATGTTCTGTCGCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395479 True 2545 lncRNA 0.38 1 17899839 17902383

Neighbor

gene id symbol gene type direction distance location
LOC113541342 acot9,acot9.1,LOC107705219,LOC107654207 coding downstream 161 17890350 ~ 17899678 (-)
abhd10b abhd10b,LOC108256739,LOC108442198,LOC107716420,LOC107705222,LOC107591218,LOC107654210,LOC107701684 coding downstream 10077 17885548 ~ 17889762 (-)
tagln3b tagln3,tagln3b,LOC108442189,LOC107701685,LOC107705223,LOC107654214 coding downstream 16506 17880010 ~ 17883333 (-)
c1qtnf9 LOC108256147,LOC108442199 coding downstream 20642 17876714 ~ 17879197 (-)
spata13 LOC108256577 coding downstream 24898 17849766 ~ 17874941 (-)
zgc:112982 NA coding upstream 81661 17984044 ~ 17995146 (-)
map7d2b map7d2 coding upstream 95284 17997667 ~ 18019023 (-)
eif1axb eif1axb,EIF1AX,LOC102359197,LOC106603066,LOC107726370,LOC105905255 coding upstream 119281 18021664 ~ 18026948 (-)
rps6ka3b LOC108256425,LOC108438828,LOC107590208,LOC107663698 coding upstream 127131 18029514 ~ 18077339 (-)
pdha1b pdha1,LOC108256426 coding upstream 177880 18080263 ~ 18086234 (-)
G333700 NA non-coding downstream 357487 17541846 ~ 17542352 (-)
G333657 NA non-coding downstream 509726 17389862 ~ 17390113 (-)
G333656 NA non-coding downstream 510098 17389454 ~ 17389741 (-)
G333653 ccdc191 non-coding downstream 514193 17385279 ~ 17385646 (-)
G333652 NA non-coding downstream 515816 17383742 ~ 17384023 (-)
G333934 NA non-coding upstream 250 17902633 ~ 17902855 (-)
G333939 NA non-coding upstream 3525 17905908 ~ 17906806 (-)
G333971 NA non-coding upstream 22108 17924491 ~ 17924789 (-)
G334038 NA non-coding upstream 126192 18028575 ~ 18028834 (-)
G334050 NA non-coding upstream 176770 18079153 ~ 18079979 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 660723 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 760154 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 1010415 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 1019955 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 1586923 16281271 ~ 16312916 (-)
LOC113541127 LOC108256571 other upstream 5201 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 6941 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 13701 17916084 ~ 17931814 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 535131 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 1103115 19005498 ~ 19015855 (-)

Expression


Co-expression Network