G333943 (LOC108256468)


Basic Information

Item Value
gene id G333943
gene name LOC108256468
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17986762 ~ 17993014 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395491
ACCAGAGTGATAATCTCTTGTGCGAAGGTCCCAGAGTGCATCGGCGTCTCCCTAAATGTCCCAGAATGCTCCAGCATGGGCAGGAAGTCGAGACGTTGTCGACCCACATTGACCAAATCGAGCGACAACTGCCTTTCAGAGGAATAGCCTAAGTGGCTGCATAAAGGATTGGGGAAGGCAGAGGATGAAGAAAGCCATCACAATATTCAAATTCATTGCAGGTTCTATGAACCTGGGAACTATGAATTACGCAAGTGACCCTTAACTAAACTCTTTgctaaaaaagcaaaaatagcaAATGACCAATTCTAACTCAGCAACTGTATCTAGGCATGGGCACCTCTGAGTAGTTTCAGGACTTTTAAGTGTTGTCTGTACGCTACGTGGAAATGTAACGTCACCCATTTTATAAACCGAAGATATGTAAGGAGAAGTCTGGATTAAATGTTACGCAGGGTAGCTTTAAAACGACTTTAAGTGACTAACTGCTGCAAAACGTTGACAGCAGTACTGTTTAATAGATGACATGGGTGTACGCACATGCTCCTGTTTTAATACTCTCTCTAACACAACCTCATCCCCTTACAACCCGGAGGTGCATAACACCTATAGCAAAACAAGGTGAAAAGGGGATgacaagattttaaaataaaattgcgCTTTTATTTGGTAGTAAATTTACTCTGAATGGTGAACGGAGCCATATCGGTGAGATGACAACAAAATTTCAATGCTAATACTTAACCTAACCGGTACTAGCATGTCTGAGTGAGGTATCTATCTAAGCAAACTTTGTaatgcattgcattttttttgcaatgattTCTGGACAAGTTCTGCTCCTAAAGTCTGCATCTATATTGACTCAATCTCTCGTCTTTCCAAAGGGTCATCTAATGAGCCAATATAGTAATGGACTGACCCTTAAGACAGTGACTGGGATTTCCCCaaggaaaaaaatccagaagCAAGGAGAAGAGGGCATGTTATACAGAGTCTGAATGGGGCTTAAATGCATTCCTTAAAGTCCTGTAATTACCTGCTTGTCATACAGGGACAAAGCTGGTCTTTAATTTACACGTCATCTACAAAGATTTCTAGTTGACGAAGCTGCTGACTTTGTGTGGGATCTGTAAGCTTCAACTTCATTCTTTAtccttttaacatttttacattgcCGAATGTAATGTGATGGATGTTGCATCAAAAAAATGCATATGGAAGACCTTTTTGTTCGGTCCTCTTTGAAAGCCTAGATGTATTTTTTCCATGCGATTACGATAAACATGGTACATCTCATTACAAACTCCAGGCTTGAAAGCTTGCCAGATGTACCAACAGTAACCAATTAGTGAAAGGCTTAGTGAAAGGTCAATAGCCCCAAACAGAACTAATCCTTACTTGctgtttcttaaaataaaacacttttatgtCATTTCATTCCCAACTAGCTACTCAATTGGGATCTGTGTACTCTGTGGCTTGGAGTACAAAATGTCCACTGTCAACAAAATGTGCTAATAAAGTTATGTCTGCCATACAGGTCAGTTAATAACACCACTCGACTTACTGGCCATGAAATGTAACTGGACTTCTAATCTACACCTCTTGTGTCCAGCTTGTTGGGTTTTCTGCAACAGTCACCAAATCTACCAACTACcagcacacacagaaacaaccTAAACCACCTACAGGGGAAATTAAAggtgttactgttttttttttttttgttttaaaaaggcTCAGTTAAGTGTTTGAACCTGAGTAGGATGTGAAACATTTCACCAAGTGCATGTAAGCTAGGAAATAttataaactctctctctctttctttacagGGTGTATCTAAAAAGCAGAGGTTGGCTATGCAAGATTCTTGCAATACTAATCAGTTTTAAAGTGAGTcagtctttttgtttgtttctgaatTCAAGCTTAAATTTAAAATCTTGATACTgtgttatattattttacacaagtCTTTAACAGGTTTAGGTTCTCTTTAAACCTTTGCTGCTTTTAAGTACACCACTGAGTCATAAATGGATGGTGAAAAGTTCATGCCTCTTTTTCACTTTCCATTTTGTTCCTTTGTTCTCCACTTTGGTGTGAACTTTGATGAGCTTCTTGTTAGCTGAGGATATTCATGTATAAATTTCCAGATTTATGAGGATAGGTAGAAAATGTCCTTGGATGATATAAGGAGTAGTTAATGACAGCACAAGTTTGCTCAGTGATCATAGCAAAGGTCTTCAGTCTGGCTTATTGCTGGAGAAAGACGTGTCCAGTTCAGGCATGCTTTAATGACTACCAGTTTGAGGACATTTATTCTTGTTCCTACATTCTGAGATTGAAGATATGGAAATACTTGTCCCAAGAAGAACCCCTGGGCTGGTCGGTGTTAAATAAGCAAAGGGATATCTTATAAAGTAGGAGAACTAACGCCACACACGTTGATGAGGCATCGTTCTCCGTCTTTCCAGAGCCAGACGGatcatttttccttttaatagATGACACAGAATGTGAGCTTTGCTTCTTTGCCTTCTTCTCTGTGAGGAGTTGAATTTGATTTTGTCCACCTTGTGATGCGAGCGTCCACTCAAAGGTCTTTACATCAGCGAGAGACAGCATTGATGAGAACTGAGCCTTGAGAACCCATGTTCTTCTGAAATTCCATTTCCAGTCTGGGAATTGGTACATTTTTGATGGTGAAGTAGATCCTCTTGCAGTCTTTCAACAGTCCAGTTGTGGATAGTGTATTAATGATGAAATGGTTGCAAAAAATCATCAAAGTAACAGACACTAAtccattttctttacatttgttGCTACCTCCACAACTTCATAAAAATAGTTCCAGTTACAGTAGACATCATCcacaaagtgtttcattcattcagaaaatACGTTTCTTCTTTGTCTTGATGTTAAAAACATCGATCTGCCTTGAAATGAAGGTGAGCACCAGCTGGAAGTTTCAAAAGCTCTTAGTTTCGAGGTGCAATATCAGCCAGGAGGTTCACATCCCCATCAGGCTCCAGAGTAAGTTGTGGCTTTCACAAAATCAAGGaccaataattaaaataattctgtCGACTTACCTTCAGTCAGTACTGCTCTGAAAATGGCAGCACGTAAATGCTTAGAGCTGTGGATACTGGTATTTTGGTGGACGCAACATCTTCACTTCCCTCTACAAAAGAGGCCATCAGTCAACTCTTGCCCCAAACTATCAAATTCAACTCATTGATCAGGCTCCTCAAGTTGGACTGTGAGGTACACGTATCGTAATAGAGTGAAGACTCCTTCCCTTGAGCATTGGCTCAGTATATCCAACTGCTATCTGCAGAATGCTATAACCTTTGGGTGCAATTTAACAAGCTCACATTTGGTTCTTCATCATTCTTCATCTTCAGGCAACTTGAGCGTCCCCCTCTTCATTATAGCTGAATCGTATGCAATACAAACTGCTACAAAGCATTCCTTCATCATCTGCCACCCTTGTCCAAACTCTTGTCTGTCACCTTGGCTAAACAGTTGAATTGTTGAAGTTGATTTTCTTCCATTGATCTCCTGAAATCCTTCAATATTGTCCGTCACCTTGGCTAAACAGTTGAATTGTTGAAGTTGATTTTCTTCCACTGATCTTGTGAAATCCTTCAATATTGTGGCCAGTAGAAATGCCACGGTAAAGCCCTTGAATTCTATATTCTTTCAACAATTTTCATATTTCGTAAGTATGTATAGCACGTCTTGCTAACACCCTTGTGAAACTCAGCACACCTCACAGATAAGGTGGTGAGAGACAGGATACACAATAAACGGACTCCAACATCATCCACCAGGTTAAATACCTGGTACTCTTCACAAGGGAACATCAGTTGGGAGTCCCAGGTGGGAGGTCACTGTCTATGATCACCTTCGGATCAACCATAAAGGGTACCAGGGACCCTTTCTCGTCCAGAATAATTGTGATCCAGTGCACAAACCATCAAAGGACGTGCGTACACTGGGGAATTTATTTGGGGGCAAGTAGATTTTATATAAAGCTTGAAGGTCTGATGAGTTGTCTGACCAGTTTCCATTGGCTCCCTGCAAACTTCCATTCTTGTGATGGCAATGAACCAAATTTCAAAAATGGTCACTTTTGTACAACAGTCTCAGTCTTCTGTAAGATGTAGCTTCATGCTGTGTATCTGGAAAAGAGGCATGAACTTTTAACCATACCCTAAAGTACTGCTGCGGCGATACTATACCTGCTCTGGCCCACAGGACGACTCATGTCCACTTTGATCTTGAGAGTCTCATGACCGGCAAAATCCATTCTAGCTCCAGGATGGTTTGGGTTCCTATGTTGATGATTTCTTTTCAGAACGCTTCCTTGTCCCAGCACACCACCATGATTCCCTCTAGGTTCCGTGTCTTCCTCCCAGTCATGAACAGAGTCTCTTGTCCTATTGCTCTCATTCACTCTGAAGTCTCTATCATCCACTGCCCTTTGTCCATGGGGCTCTCTTGAATGTGATCCCAACCTGGGTTGCTCAGTGTGTTGTCGCATGCCTTGCAAAGGACTTCCTCTTTCAGCCAGAGAGGCATGGAATCTTGTGTCTTCCCTAATGTGATAGGTTGATGAACCACTGGGGCTATCATGGGATGTTCCTGGATGATGGTTATAATCCCTTCCATGTTTACGGAGTTCCTTGCTTCTTGAAGATTCTCTTCCCCTGTTGGGATCTCTGCCCCTCTGTGGTTCACTGCTTTTTGAATAACCTCTGTCTCTTGGTAGGTCACTGGTTCTCAGAGAATCACGGCTCCTTGGATGCTCTTGGTTCCTAACTGGATCATGGCTCCTTGGATGCTCCTGGTGCCTAACAGAACCAGTGCCCCTTGGATACTCTTGGTTCCTATCTGGATCATGGCTCCTTGGATGCTCTCGCTGGCTAACTGGATTGCGATTCCTTGGATGCTCTCGATCTCTAACAGGACCACCGCTTCTTGGTTGCTCTCTGTCCCTTACCAGATCACGGCTCATTGGACGCTCTCGGTCCCTACCTGGATCATGATTCCTTGGATGCCCTCGCTCCCTAGCTGGATCGCGGCTCCTTGGACGTTCTCGGTCCCTACCTGGACTGTGGATCCTTGCATCATGTTTTGGGATTCCATGATCATGCTCCACTATAACAGGGGCACAATGTGGACTGAAGCCCCTGTGTGACACAGTATATTCCTCCTGTGGATCCAAATCTTGGTATCCTTTAAAATGTAGTTGATGCTCCGAATAATTTGACTTGAGTGACCTGTGTTGGAAAAGCAAGTACAATATGTTCAACATTAAAAtaagtttaagaaaaaaaaaagaaagaaaaaaaaaaaaaataaaaataaaaaaataaatcagctgcCCATTTTAAATGCTAGCCATAAGCtatctataaatataatatatatcttttACAATTTGCACATTGCTGCCTGGTGATCAggaacagcatttaaaaatgaataaattaatatattttaaaacatggtcatgtaataaatatttatttgtaaatgttcaAATTTTCTACATCTAATAGCTAGTGACTTCCTAACTGAATCCAAGTTTTCTCCACTCCTTTCCTTCGCTTCGGCAGATCAGTGTTCTTGTACCTCTCGCTATAGGAGCTTCTTTCATATCTATCTTCGTGTTCTTCATTATAATATCCATGTTCCATTCTGTCGTGTCTCTTTCCTTGTGAATGCCTAGGACTGGAACTTCTTGAATAGCGCCTGTCTACATCAGCAACATCACGCTCGTTCCTCCTCTGGCCTGGAGACTGAATCCTCTGATGCGTTTCCATGCCATAGTTTGAAGTTTCCGGGGAACACAATCTCTCCCTAGGCAGCCGTCTCGGAGAGCATGCCGAGTCCTCTTCAAAACTCTGGACGCCGTCCTGTGCGTGGTACCTCGACATGGACGAAGCTTTCCGCTTTTCGGCACGACCTATAGCCTCGATGAACTTGGCCCAGTGGTCAACCTGCTCCTCTGCTTCAGAGGACCCGTTATCCCAGCGTACGCCGCTTTCCAAATTTCTGTTGTCGACATTTTCTGAACCTCTCCAAGGATCAGAATGCACCGGTGCATGGTACTGCTCACCGTAATATCCATCTCGCCTTCCGAGCAGCGTCGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395491 True 6177 TUCP 0.42 2 17986762 17993014

Neighbor

gene id symbol gene type direction distance location
lipib LOC108256469,LOC108438884,LOC107721863,LOC107705251,LOC107590204 coding upstream 3342 17973204 ~ 17983420 (+)
zgc:112408 zgc:112408,LOC108256202,LOC108438348,LOC107721840 coding upstream 23291 17960988 ~ 17963471 (+)
chodl chodl coding upstream 35136 17942428 ~ 17951626 (+)
atp6v1ab atp6v1a,atp6v1ab,LOC107599937,LOC107687683,LOC107591235,LOC107716398,LOC107654231 coding upstream 247177 17727853 ~ 17739585 (+)
boc boc coding upstream 280644 17678898 ~ 17706118 (+)
ythdf3 ythdf3,LOC107666630,LOC107705256 coding downstream 94633 18087647 ~ 18097915 (+)
bhlhe22 bhlhe22 coding downstream 221849 18214863 ~ 18217206 (+)
dnajc5b dnajc5b,LOC107586796,LOC107663636,LOC107656153,LOC107721861 coding downstream 379708 18372722 ~ 18378196 (+)
trnaa-agc_15 NA coding downstream 386288 18379302 ~ 18379374 (+)
trnaa-agc_16 NA coding downstream 386928 18379942 ~ 18380014 (+)
G333938 NA non-coding upstream 79081 17907366 ~ 17907681 (+)
G333937 NA non-coding upstream 81537 17904953 ~ 17905225 (+)
G333801 LOC108256577,LOC108442200 non-coding upstream 135967 17849795 ~ 17850795 (+)
G333799 NA non-coding upstream 228833 17757724 ~ 17757929 (+)
G333798 NA non-coding upstream 229964 17756558 ~ 17756798 (+)
G333966 NA non-coding downstream 19913 18012927 ~ 18015594 (+)
G333953 eif1axb,EIF1AX,LOC102359197,LOC106603066,LOC107726370,LOC105905255 non-coding downstream 28725 18021739 ~ 18026962 (+)
G334005 NA non-coding downstream 50810 18043824 ~ 18045177 (+)
G334028 NA non-coding downstream 86137 18079151 ~ 18079370 (+)
G334032 NA non-coding downstream 92305 18085319 ~ 18108804 (+)
pan3 pan3,LOC107705213 other upstream 190241 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 444375 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 684758 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 876735 17100164 ~ 17110027 (+)
G332636 NA other upstream 2420099 15566175 ~ 15566663 (+)
mtfr1 mtfr1 other downstream 322340 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 474864 18467878 ~ 18486009 (+)
G334373 NA other downstream 700135 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 719034 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 1324843 19317857 ~ 19427936 (+)

Expression


Co-expression Network