G333953 (eif1axb,EIF1AX,LOC102359197,LOC106603066,LOC107726370,LOC105905255)


Basic Information

Item Value
gene id G333953
gene name eif1axb,EIF1AX,LOC102359197,LOC106603066,LOC107726370,LOC105905255
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18021739 ~ 18026962 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395506
TAGAAATGTTACTATTGTGTAATTTGATTATAAGGAAGCACGGAGGCTTCAGGTGCACAGGAATAACGAGACATGCGTAGATTTTAGAGATCAGAATCAGTGGGTGAAATCGACGTCAGCTGCGAAGAGAAAAGCATCGGTGCATCTCCAGtgtgaatttctttcttttatttatttaatgaagcagctctgtattaaaaaaaatctaatttcttGTTTCCaaaacattcagaaataaaaacatcagaGGAAACATGTTCCTGTGTGTTCCCAGAGACGGACTCGATGAGTGTCCAGCGGCCTATTTAAGctaattaaagacaaaaaaaacagacagtggCAAGGTATAGGCAGCTACTCTtctcacaaacatttctcttgATCATTTGGACGCTACAAAAATTATAGACTgcaagacaaaaacataaaattgtttgtttttattgcgAATCCAGAGATTCTTGAACTAAATTCCACTTGGtgtgaaattaatataaatacattaaaaactaACAATGTATTGGAGATAGTGATGCAGTCGTGTAGTTAGTGACAAAAGCCCTAAATCTGAGCCACAGGGTCTGAGAGGATCAGACTCCAGGCATCCTGCTTCTGCCGGCGAATTAAAGTCCACTTCCTCCTTAGCAGCAGCTCCACGTTAGATCATCAATGTCCTCGTCGTCATCTCCAATATCGTCGAACTGAATTTCGTCATCGTCTCCGGGTCCGAACGTGTCCGTCTCATTGATTTTGgCGTGCTCTGGAAGCTCTCCATACGCCTTCAGACTCCGAGCCTCATCAGCGTTGTACTTCAAAATAACGTCTGCTTTCGTGTCCTGATAATCCCTCAGACCTATGAGGATAATGTCTGATGTGTTGATCCAaacCTTTTTCCGGAGTTTTCCTCGGATGTGACAAAGCCGTTTGACGCCGTCGAAGCACATGGCCTCCAGCCTGCCGTTTCCCAGCATCTTTATCACCTGGGCGTACTCTTGTCCATCCTCTTTAAACACCAGCTCTCTCTTCTCCGACTCGTTCTCATTCTTACCACGTCGCCTGTTCTTTCCTCCTTTACcttTGTTTTTTGGCATGTTCTAGATATCCGACTGCTGCCTCCTGTATCAGTTCCAAaagtaaatatgtatttaaagctttaaaatgacaaattagtTGCTTCAAACAGGCGGTTAGCGACACCCGCTCGAAGAGAAAGAAGCCTGCTCAATTTAAGGCGTAATGCGCATGCGCAGGTCATTCAAAACGAG

Function

symbol description
eif1axb Predicted to enable translation initiation factor activity. Acts upstream of or within erythrocyte maturation; regulation of hemoglobin biosynthetic process; and regulation of production of miRNAs involved in gene silencing by miRNA. Predicted to be active in cytoplasm. Orthologous to human EIF1AX (eukaryotic translation initiation factor 1A X-linked).
eif1ax Enables RNA binding activity. Predicted to be involved in translational initiation. Predicted to be located in cytosol. Predicted to be active in cytoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395506 True 1265 lncRNA 0.42 7 18021739 18026962

Neighbor

gene id symbol gene type direction distance location
lipib LOC108256469,LOC108438884,LOC107721863,LOC107705251,LOC107590204 coding upstream 38319 17973204 ~ 17983420 (+)
zgc:112408 zgc:112408,LOC108256202,LOC108438348,LOC107721840 coding upstream 58268 17960988 ~ 17963471 (+)
chodl chodl coding upstream 70113 17942428 ~ 17951626 (+)
atp6v1ab atp6v1a,atp6v1ab,LOC107599937,LOC107687683,LOC107591235,LOC107716398,LOC107654231 coding upstream 282154 17727853 ~ 17739585 (+)
boc boc coding upstream 315621 17678898 ~ 17706118 (+)
ythdf3 ythdf3,LOC107666630,LOC107705256 coding downstream 60685 18087647 ~ 18097915 (+)
bhlhe22 bhlhe22 coding downstream 187901 18214863 ~ 18217206 (+)
dnajc5b dnajc5b,LOC107586796,LOC107663636,LOC107656153,LOC107721861 coding downstream 345760 18372722 ~ 18378196 (+)
trnaa-agc_15 NA coding downstream 352340 18379302 ~ 18379374 (+)
trnaa-agc_16 NA coding downstream 352980 18379942 ~ 18380014 (+)
G333966 NA non-coding upstream 6145 18012927 ~ 18015594 (+)
G333938 NA non-coding upstream 114058 17907366 ~ 17907681 (+)
G333937 NA non-coding upstream 116514 17904953 ~ 17905225 (+)
G333801 LOC108256577,LOC108442200 non-coding upstream 170944 17849795 ~ 17850795 (+)
G333799 NA non-coding upstream 263810 17757724 ~ 17757929 (+)
G334005 NA non-coding downstream 16862 18043824 ~ 18045177 (+)
G334028 NA non-coding downstream 52189 18079151 ~ 18079370 (+)
G334032 NA non-coding downstream 58357 18085319 ~ 18108804 (+)
G334078 NA non-coding downstream 173433 18200395 ~ 18202905 (+)
G334077 NA non-coding downstream 176101 18203063 ~ 18203680 (+)
G333943 LOC108256468 other upstream 28725 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 225218 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 479352 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 719735 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 911712 17100164 ~ 17110027 (+)
mtfr1 mtfr1 other downstream 288392 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 440916 18467878 ~ 18486009 (+)
G334373 NA other downstream 666187 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 685086 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 1290895 19317857 ~ 19427936 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_02141968_02146898 EIF1A, EIF1AX, EIF1AY, EIF1AXA, EIF1AXB, MGC81333 coding CI01000339 null 2141792 ~ 2146898 (-)