XLOC_000056 (FO744838.1)


Basic Information

Item Value
gene id XLOC_000056
gene name FO744838.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 4598060 ~ 4680477 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000113
TTTCACACTAATTGGACCATAGTTAACACCTGAGTGCTCATTTCGAGCTGTCATGCCAAGTCAAACTATTTAATCCAGTGCCGGAGTTACCCGTTCTCGCAAATTATGGATATTACGTGataattcatttgtatatttgttatattttcaaCAACCATAAGCAAAAGCAGAATGGCGTCTGCAGAAGCCTCGCGGATATCATGGAAATAAGGAACGGCACTCATGAGATGGGATGTCATCCGGCCCAGTGATCTGCCGACGGAGAGACAAATTCTGATGGCAGGCTTATGGCCACGGTGCCTTGGTGGAGGAAAAAGGTGAAGCCTCAGCTGTCCAAAGCCCATCACATCCGACAGCTGCTAAGCGGCCCGGATGACTTTGAAACAAGGAGGAATTACCTGCTGGAACGCTGATAAAGCAGAACTCAAAAGAAGATGGCAGAATGACAGTCTGAGTCTCCATTCACCTTCACTGCACCTTCTTTTAAAAACTAACAGTGACTGAGACTGCAAATCTgccacatctctctctctctgtcacagTGAATTCAGACCGCCGTACGCTTTGAAATGACTCCATGATGTGTAAATGATGACGCCATTCAAGTTTATAGGTCAGCTATTCTTTTAAGTGATTGATATGATATGCTTTTTGCCTggattttatttggtttgcataatGATGAACGCTGTTCACGCTGGCGTATTCATTGTGCAGCTCATAGTCTATCCTCAGATGACTAGATAAGAGATAATGTGCATTTCGCACAGATAAGAAAACAGCTTTGAGTCGTGATAGAAAAACAGCCTCTCATCCTGACTTCATTAATATTCCGCTATCAGATACTGATCTGACTTTATATTGCTATCACTAAAATTAGTGTGCTATAGTTGTCAAATACAACgcgcacattttttttttaaagcatgcttTTTTACcctttaatatgttgtgtaatTGTACAGTATTTTACAGTCTGCAGAGTTTTAAAGTACATTTTCCTTCCCAAAGCAAGTGTGAAGTGCTTGAAATGAGACATTAATAATTCCtattagggttgcacaatattggACATAAAGCTGACATTGGAATTTACAcgtaccggccactttattaggtacacttgtccaactgctcattaacgcaaatttcttaaCAGCCAATCAGATAGCAGCAGCTCAACGCATTAGGACTCAacggctaaggggtagaattgggattgggccttaatgtggcatagttgttggtgccagacgggctgatctgagtatttcagaaactgctgatctactgggattttta

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117775

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000113 True 1302 lncRNA 0.41 3 4598060 4680477

Neighbor

gene id symbol gene type direction distance location
XLOC_000055 slitrk6 coding upstream 443728 4101741 ~ 4154332 (+)
XLOC_000054 CABZ01063288.1 coding upstream 838026 3759924 ~ 3760034 (+)
XLOC_000053 NA coding upstream 877457 3718666 ~ 3720603 (+)
XLOC_000052 gpc6a coding upstream 1562041 2712956 ~ 3036019 (+)
XLOC_000050 farp1 coding upstream 2153850 2301958 ~ 2444210 (+)
XLOC_000057 NA coding downstream 220983 4901460 ~ 5030155 (+)
XLOC_000058 spry2 coding downstream 593004 5273481 ~ 5277583 (+)
XLOC_000059 NA coding downstream 631002 5311479 ~ 5313595 (+)
XLOC_000060 tuba8l2 coding downstream 721999 5402476 ~ 5419116 (+)
XLOC_000061 stk16 coding downstream 741962 5422439 ~ 5434261 (+)
XLOC_000051 CR352215.2 non-coding upstream 2194836 2403103 ~ 2403224 (+)
XLOC_000049 CR352215.1 non-coding upstream 2322318 2275605 ~ 2275742 (+)
XLOC_000044 NA non-coding upstream 2574415 2023409 ~ 2023645 (+)
XLOC_000064 NA non-coding downstream 1026493 5706970 ~ 5728684 (+)
XLOC_000065 NA non-coding downstream 1114536 5795013 ~ 5799092 (+)
XLOC_000072 NA non-coding downstream 1699401 6379878 ~ 6554470 (+)

Expression


Co-expression Network