G334032


Basic Information

Item Value
gene id G334032
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18085319 ~ 18108804 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395608
CAATCAGGGAAAAGCCACAAAGCTTCATGAAGCTTCATCCACCCTTCCCATATATCACTCCTTACAAAGCTGAGCAAAGACTCATGGGTGAGAATCAAAGATTTTATGAGATAAGACAAAATAATCAAGATTTAGTTCACCAAGAATCATGAACCCACCTTGATGTCAAAGGTGGCCTGAGGTGTGAAGTTGGCATAGGAGCGGCTCACGAGTACCACTGCGGACAGTTGTTCCTTGCTGCACCTCTGAGCGCGATTGAAATAAAAGGCAACATGTTTTGCATAGTTTACAGCCAACGCTAAAAGGTTAGCTTCTTCTGTTTACCCGCACTTCCtggtcttcttcttcttctgcggTGaggagaaagaggagtcTGACAGGGAAAGCAGAGATAACACacagtataattatatattgtgAGCCATGTGTGTCCTTTTTCCTGACTTTGCATCGGCTCTCCGGCGCTGAGAGGTTAACGACAGTCCTTCACCGTCCTTGTCAGACATGTATGAATGCAGTGCttttgctggtgtgtgtgtgtgtgtgtgtgtggcagtcgGGCAGATGGTCACTGTGTGAATAACGATTGTCAGACTCTGGCAGGTCCCTCAGTGATGTAGCGGGGCAGGAGGTAGACACAGGGCTGATGGGTAAATCAGCCACTGAATACTAACACCAGCCTTctggaaacacaaacacacacacacacacacactgtaaaggCAAAGTCCATGATTTTAGAAGATGTAAGAAGAGTGAGGTGAGTTTTTAAAACACTCTCTTTAGTGTCCACTtcaaagccacacccactcTGCTAGTACAAGAGGTGGAGTTTTTTGATTGACAGCCACCCACTTGTCCCGCCTGCTTGGTTGAATGCTGGTGTTTCACATCCTGCTTTTGTTTCTGTCGTTTTCAGAACCTGGGTCGCTGGGTACAGGATGGAAGCTTGTTTCTGATGCTTTAATGAAATACATTTGTAAAGATTTCTTGTcattatattcaatattcacTGATCTTTCACAGAACCTATTTAACCCCTTATGTCCTGGTGAATTTTGTGCATGTCCTCCTGAATAAATGCAAAAGAATgtagtgtattttttaaatcatgaaaaTATAGTActgttacaaataaaaacacaaaagcagtcACTTTTCAGTTGGAGTTCAAAATAATGACTTGagttcaaaataataaacagagacTAGaatcattaaaagaaaaagaaacatgaatCAGAGGCTTGATATGTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395608 True 1259 lncRNA 0.42 3 18085319 18108804

Neighbor

gene id symbol gene type direction distance location
lipib LOC108256469,LOC108438884,LOC107721863,LOC107705251,LOC107590204 coding upstream 101899 17973204 ~ 17983420 (+)
zgc:112408 zgc:112408,LOC108256202,LOC108438348,LOC107721840 coding upstream 121848 17960988 ~ 17963471 (+)
chodl chodl coding upstream 133693 17942428 ~ 17951626 (+)
atp6v1ab atp6v1a,atp6v1ab,LOC107599937,LOC107687683,LOC107591235,LOC107716398,LOC107654231 coding upstream 345734 17727853 ~ 17739585 (+)
boc boc coding upstream 379201 17678898 ~ 17706118 (+)
bhlhe22 bhlhe22 coding downstream 106059 18214863 ~ 18217206 (+)
dnajc5b dnajc5b,LOC107586796,LOC107663636,LOC107656153,LOC107721861 coding downstream 263918 18372722 ~ 18378196 (+)
trnaa-agc_15 NA coding downstream 270498 18379302 ~ 18379374 (+)
trnaa-agc_16 NA coding downstream 271138 18379942 ~ 18380014 (+)
trim55b trim55,LOC107590338,LOC107663638 coding downstream 271487 18380291 ~ 18390865 (+)
G334028 NA non-coding upstream 5949 18079151 ~ 18079370 (+)
G334005 NA non-coding upstream 40142 18043824 ~ 18045177 (+)
G333953 eif1axb,EIF1AX,LOC102359197,LOC106603066,LOC107726370,LOC105905255 non-coding upstream 58357 18021739 ~ 18026962 (+)
G333966 NA non-coding upstream 69725 18012927 ~ 18015594 (+)
G333938 NA non-coding upstream 177638 17907366 ~ 17907681 (+)
G334078 NA non-coding downstream 91591 18200395 ~ 18202905 (+)
G334077 NA non-coding downstream 94259 18203063 ~ 18203680 (+)
G334120 NA non-coding downstream 187839 18296643 ~ 18324885 (+)
G334209 NA non-coding downstream 326917 18435721 ~ 18437406 (+)
G334210 NA non-coding downstream 330345 18439149 ~ 18439446 (+)
G333943 LOC108256468 other upstream 92305 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 288798 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 542932 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 783315 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 975292 17100164 ~ 17110027 (+)
mtfr1 mtfr1 other downstream 206550 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 359074 18467878 ~ 18486009 (+)
G334373 NA other downstream 584345 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 603244 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 1209053 19317857 ~ 19427936 (+)

Expression


Co-expression Network