G334038


Basic Information

Item Value
gene id G334038
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18028575 ~ 18028834 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395616
ATGGGCTCTTCTTCACGTGGAGTCTGTCAGGCATTGTCAGGAGGGGACCTCGTGTAGTTTTTTCAGTACTGGAACTCACAGTCCACCTTTATCAAAGCTACTATATCTTTCTCACAGTTAGAAACCTGTTCTTGTCATTTGAATTGAACGTGTTTATTCCAAACATCACTAACTCCGAAAAAATAAGCTTATAAGTCATTTAAATTGGGATGTAATATGTTATGTCGGTGGAAAACTCAGGAATGAAAAAAGCTCCAata

Function

NR:

description
PREDICTED: ATP-dependent DNA helicase Q4

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395616 True 260 lncRNA 0.38 1 18028575 18028834

Neighbor

gene id symbol gene type direction distance location
eif1axb eif1axb,EIF1AX,LOC102359197,LOC106603066,LOC107726370,LOC105905255 coding downstream 1627 18021664 ~ 18026948 (-)
map7d2b map7d2 coding downstream 9552 17997667 ~ 18019023 (-)
zgc:112982 NA coding downstream 33429 17984044 ~ 17995146 (-)
LOC113541342 acot9,acot9.1,LOC107705219,LOC107654207 coding downstream 128897 17890350 ~ 17899678 (-)
abhd10b abhd10b,LOC108256739,LOC108442198,LOC107716420,LOC107705222,LOC107591218,LOC107654210,LOC107701684 coding downstream 138813 17885548 ~ 17889762 (-)
rps6ka3b LOC108256425,LOC108438828,LOC107590208,LOC107663698 coding upstream 680 18029514 ~ 18077339 (-)
pdha1b pdha1,LOC108256426 coding upstream 51429 18080263 ~ 18086234 (-)
armc1 armc1,LOC108438805,LOC103047274,LOC107590214 coding upstream 280339 18309173 ~ 18315257 (-)
pde7a pde7a,LOC107586714 coding upstream 297261 18326095 ~ 18363579 (-)
trnay-gua_3 NA coding upstream 350202 18379036 ~ 18379121 (-)
G333971 NA non-coding downstream 103786 17924491 ~ 17924789 (-)
G333939 NA non-coding downstream 121769 17905908 ~ 17906806 (-)
G333934 NA non-coding downstream 125720 17902633 ~ 17902855 (-)
G333932 NA non-coding downstream 126192 17899839 ~ 17902383 (-)
G333700 NA non-coding downstream 486223 17541846 ~ 17542352 (-)
G334050 NA non-coding upstream 50319 18079153 ~ 18079979 (-)
G334042 NA non-coding upstream 65669 18094503 ~ 18099286 (-)
LOC113541306 NA non-coding upstream 78863 18107697 ~ 18109070 (-)
G334079 NA non-coding upstream 112594 18141428 ~ 18202900 (-)
G334080 NA non-coding upstream 174237 18203071 ~ 18204225 (-)
zmp:0000000991 NA other downstream 96761 17916084 ~ 17931814 (-)
c22h11orf65 c23h11orf65 other downstream 112019 17909324 ~ 17916556 (-)
LOC113541127 LOC108256571 other downstream 119763 17907584 ~ 17908812 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 789459 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 888890 17116098 ~ 17139685 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 408680 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 976664 19005498 ~ 19015855 (-)
pdk3a pdk3,pdk3a,LOC107586717,LOC107705263,LOC107656160,LOC107663620,LOC107590342,LOC107721912 other upstream 1478254 19507088 ~ 19521331 (-)
nup58 nup58,LOC107721897,LOC107590217 other upstream 1526307 19555141 ~ 19579031 (-)
G335165 amer2 other upstream 1571893 19600727 ~ 19603693 (-)

Expression


Co-expression Network