G334079


Basic Information

Item Value
gene id G334079
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18141428 ~ 18202900 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395659
CACCTCAAACCCAACTCCAGTACCAGCAACTGTAATATCACCGgctccttgaaaaaaaaaatccatattcaTCCTGTTTCACGTTCCTGGCGCGCGACTCTCGGTCGTCTGGTCAGTATCCTGTGAGCACCGCCTTTCGTTAAGTGCTTAAAAGTGATGAGGAGTGGATGGgggggaaaaggaaaaagaaaaaccacaAAAGCAGGCTGATTTGCCTACTTAATTGTTGGTGCTGAAACACTGCATGATGCGTGTAAAAGATGGAGGTCGCCTTCATCCttcatcctttttctttttttattaactggTTCAAAAATCAAATCTGCGAGGCCATCACGGATTTAATGTGAGATCTGcttcaaacaggaagtctgATCTCTTCcaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395659 True 401 lncRNA 0.42 2 18141428 18202900

Neighbor

gene id symbol gene type direction distance location
pdha1b pdha1,LOC108256426 coding downstream 55194 18080263 ~ 18086234 (-)
rps6ka3b LOC108256425,LOC108438828,LOC107590208,LOC107663698 coding downstream 64089 18029514 ~ 18077339 (-)
eif1axb eif1axb,EIF1AX,LOC102359197,LOC106603066,LOC107726370,LOC105905255 coding downstream 114480 18021664 ~ 18026948 (-)
map7d2b map7d2 coding downstream 122405 17997667 ~ 18019023 (-)
zgc:112982 NA coding downstream 146282 17984044 ~ 17995146 (-)
armc1 armc1,LOC108438805,LOC103047274,LOC107590214 coding upstream 106273 18309173 ~ 18315257 (-)
pde7a pde7a,LOC107586714 coding upstream 123195 18326095 ~ 18363579 (-)
trnay-gua_3 NA coding upstream 176136 18379036 ~ 18379121 (-)
trnay-gua_4 NA coding upstream 176749 18379649 ~ 18379734 (-)
crhb LOC108256093 coding upstream 188471 18391371 ~ 18392978 (-)
LOC113541306 NA non-coding downstream 32358 18107697 ~ 18109070 (-)
G334042 NA non-coding downstream 42142 18094503 ~ 18099286 (-)
G334050 NA non-coding downstream 61449 18079153 ~ 18079979 (-)
G334038 NA non-coding downstream 112594 18028575 ~ 18028834 (-)
G333971 NA non-coding downstream 216639 17924491 ~ 17924789 (-)
G334080 NA non-coding upstream 171 18203071 ~ 18204225 (-)
G334110 NA non-coding upstream 9016 18211916 ~ 18212129 (-)
G334191 NA non-coding upstream 185953 18388853 ~ 18427075 (-)
G334235 NA non-coding upstream 232858 18435758 ~ 18436522 (-)
G334248 sgk3,LOC107721888,LOC107663688,LOC107705243 non-coding upstream 259056 18461956 ~ 18464554 (-)
zmp:0000000991 NA other downstream 209614 17916084 ~ 17931814 (-)
c22h11orf65 c23h11orf65 other downstream 224872 17909324 ~ 17916556 (-)
LOC113541127 LOC108256571 other downstream 232616 17907584 ~ 17908812 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 902312 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 1001743 17116098 ~ 17139685 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 234614 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 802598 19005498 ~ 19015855 (-)
pdk3a pdk3,pdk3a,LOC107586717,LOC107705263,LOC107656160,LOC107663620,LOC107590342,LOC107721912 other upstream 1304188 19507088 ~ 19521331 (-)
nup58 nup58,LOC107721897,LOC107590217 other upstream 1352241 19555141 ~ 19579031 (-)
G335165 amer2 other upstream 1397827 19600727 ~ 19603693 (-)

Expression


Co-expression Network