G334120


Basic Information

Item Value
gene id G334120
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18296643 ~ 18324885 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395714
atatatatatatatatatatatatctgTCCTGGATTACTGTTTTGTTGACGATTTGACACGGACTAGGTCCCAGGACAACAAATCCATAAGCTCAAACCTGCTCAGAGCAGCTTATTCAGCTTAAACAAGACTAGATCACgtatttaaaatgctttatgaatatgaaaattgtGCCCATGTTTTATAACTAACTATATCACATGATCAACTAAATCAGCGTAATGTATTTGTTATAGCGAGActctaaattatttaaaaatttgtcCTCGTGTCTAAAGAAAAACAGTGTCCGTGATTTGAATAAGCTCAGATCTGGAGTTCATGAGTCTCTGTTGCTTAAGTTCAGGAACAATCCCATGTTAGGAGTGTTACGATATAGCAATAAATTTCCACAGTACACTTTTTTGGACCAGCATTATTACTCAATAACACATGGTTAATTAGATATATACATTTTCACACTGGTTCccttttatttcaatattatgtTTGCCGTTTTGCATATTTTGAATCgtaaaaataatttcatctTTGTTTTTGTGATATGGTCCATCCATATTCCACTGTTTATAACACTATAATACAGTTAACTCTAACTGAAGCACTTTGATGAAGTAAAATGTCGAGTGTAAGATACACTCGGCGCCCGAACATCCTCAAACATGCAGGAGTATTAAAGGGAATCA
>TU395716
tgtatatatatatatatgTCCTGGATTACTGTTTTGTTGACGATTTGACACGGACTAGGTCCCAGGACAACAAATCCATAAGCTCAAACCTGCTCAGAGCAGCTTATTCAGCTTAAACAAGACTAGATCACgtatttaaaatgctttatgaatatgaaaattgtGCCCATGTTTTATAACTAACTATATCACATGATCAACTAAATCAGCGTAATGTATTTGTTATAGCGAGActctaaattatttaaaaatttgtcCTCGTGTCTAAAGAAAAACAGTGTCCGTGATTTGAATAAGCTCAGATCTGGAGTTCATGAGTCTCTGTTGCTTAAGTTCAGGAACAATCCCATGTTAGGAGTGTTACGATATAGCAATAAATTTCCACAGTACACTTTTTTGGACCAGCATTATTACTCAATAACACATGGTTAATTAGATATATACATTTTCACACTGGTTCccttttatttcaatattatgtTTGCCGTTTTGCATATTTTGAATCgtaaaaataatttcatctTTGTTTTTGTGATATGGTCCATCCATATTCCACTGTTTATAACACTATAATACAGTTAACTCTAACTGAAGCACTTTGATGAAGTAAAATGTCGAGTGTAAGATACACTCGGCGCCCGAACATCCTCAAACATGCAGGAGTATTAAAGGGAATCAGGATGAAATATCTGTTATTTAAAACAGTTCCATTGTTGTGATATCTTTATAAAAGAAACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395714 False 687 lncRNA 0.33 2 18302862 18324824
TU395716 True 739 lncRNA 0.33 2 18296643 18324885

Neighbor

gene id symbol gene type direction distance location
bhlhe22 bhlhe22 coding upstream 79437 18214863 ~ 18217206 (+)
ythdf3 ythdf3,LOC107666630,LOC107705256 coding upstream 198728 18087647 ~ 18097915 (+)
lipib LOC108256469,LOC108438884,LOC107721863,LOC107705251,LOC107590204 coding upstream 313223 17973204 ~ 17983420 (+)
zgc:112408 zgc:112408,LOC108256202,LOC108438348,LOC107721840 coding upstream 333172 17960988 ~ 17963471 (+)
chodl chodl coding upstream 345017 17942428 ~ 17951626 (+)
dnajc5b dnajc5b,LOC107586796,LOC107663636,LOC107656153,LOC107721861 coding downstream 47837 18372722 ~ 18378196 (+)
trnaa-agc_15 NA coding downstream 54417 18379302 ~ 18379374 (+)
trnaa-agc_16 NA coding downstream 55057 18379942 ~ 18380014 (+)
trim55b trim55,LOC107590338,LOC107663638 coding downstream 55406 18380291 ~ 18390865 (+)
si:dkey-97a13.12 NA coding downstream 71342 18396227 ~ 18432150 (+)
G334077 NA non-coding upstream 92963 18203063 ~ 18203680 (+)
G334078 NA non-coding upstream 93738 18200395 ~ 18202905 (+)
G334032 NA non-coding upstream 187839 18085319 ~ 18108804 (+)
G334028 NA non-coding upstream 217273 18079151 ~ 18079370 (+)
G334005 NA non-coding upstream 251466 18043824 ~ 18045177 (+)
G334209 NA non-coding downstream 110836 18435721 ~ 18437406 (+)
G334210 NA non-coding downstream 114264 18439149 ~ 18439446 (+)
G334211 mybl1 non-coding downstream 115370 18440255 ~ 18440656 (+)
G334219 NA non-coding downstream 175898 18500783 ~ 18530907 (+)
LOC113541128 NA non-coding downstream 218477 18543362 ~ 18681823 (+)
G333943 LOC108256468 other upstream 303629 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 500122 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 754256 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 994639 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 1186616 17100164 ~ 17110027 (+)
mcmdc2 mcmdc2 other downstream 142993 18467878 ~ 18486009 (+)
G334373 NA other downstream 368264 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 387163 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 992972 19317857 ~ 19427936 (+)
G334838 NA other downstream 1251226 19576111 ~ 19577073 (+)

Expression


Co-expression Network