G334209


Basic Information

Item Value
gene id G334209
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18435721 ~ 18437406 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395829
ccccctcaataCGTACAAGGGTCACAAATGGGTACTGGCAGGATTCAGAGAGGCAGGCGATATATGTTCAGCAAAATAGTGTTGGAAGTAAAATGTCTTGCTTGTGAAAATGTGTATAGATAATGTCAGATAAGCTGAATGTACTGTTTGTCATGCATTGTTTTTAAACTGCTACATATATCTACTTTCCTTCAGAATCTACGATTAGGTGGTTGAGTGTTAAATAGAATTTTATACACATAAACTTGCACCTACATTAAAAACAAGACACACATGCCTCACAACTCTGTTGTTACCTGCACTGTTACATTAAACAATATTGAATCTTATGCTATGAAATGTGGTGAATAACCTAATGAACTCTGGGAtttgcaaatacattttttgtagaattaaaatgaaaaaaaaaaaaaaaatgctacccATAGGACAGGATGTCTTAGTGTTGGACTAACCAACTGATTTATAAAAAGCTCTCGGCATATCACAGAGGCttgttttaattataatgcCTTAATGTAGACCCTTTAAAAACCTACTGAATAATTTCACATTGACCAGTATAACACACCGACACTGACTTGAAAAACGCTCTACTGTAAAAATTTCAATTACCTTCAAGTTAGATTTAAGCAGTACAACTGTTCTACATCTCCAAAGGATTGTGCTTGTGTTTCGTTCAGTTCTTTTCTGATTCTCAGCTACAGCACAGCCTTCAATTTCACCTGCAGAATtactcagtgagagagaggaactCTTATTTGAGTCCATttaacagtcagtgtttcatttgtacaagaaagaaaaatcagccACTTCAATCACCATCACAAAAAGACTCAAAATGTAAACACTTtaggggattaaaaaaaaaaaaaaaaaacactatcaAAAAACAGACACTCgaacaacatttaaaaagtgcaatttGCCTACACAAGCAGTTGGAAGCTGAATGTTGCTACCTGTATTGTAATTAAACTTGTTTGAACTCACACAGAACTTTGGAGGTGACTAGATTGATGCTAGATTGAAACCAATTAGTAAAGAATGATTAGTGGCAGTGTATGTTGTTAAaaattttagaaatgtttctgatggaaGGTAGCCAAATATTGTTTCTTAacacaacagaaataaaattctcTTTATagctttgaaataaataaattagtaaagaTTTAATAAATAGAACCTACAGCCCTAAGTGATGGAGAAATCCATCTCGTCTTGGAACGTGTTACTTGTGTGAGACTGCATATTAAATATCAGTACCAAACATGACTTCTGATAGTTTGAAACCTAAAGCAGCTAGGATGCAAGTTGCTGGTTTTGTTTTTAGGCTGCAGTCACTGCCGTGTCCGTCAGCGAAAGGTAGGTCTGTTTCAAAACGGGACAGACCAGGTGCTCAATAAACATCTCAACAACTCGAATTACAGCAACGAATAAAttagaaaatcaaaaacaaacgaaaaaaaaaagaggtaccCTTCCATTCGACGCTACTTTAGCAGTTAAATGCTGTACAATACATTCAGTGAGTGTCAAACTCAGCAAAAACACGGAGCAGAACCCTTATTATGGTTCGAGCCAAAACAGTCACATTGCAAGTGCTATCCAGTTCCTCCTAAACATGCTTCAAGCCCCTCCCCTTTACAGTTACCCACAATCAGTAGTGCAACACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395829 True 1686 lncRNA 0.36 1 18435721 18437406

Neighbor

gene id symbol gene type direction distance location
si:dkey-97a13.12 NA coding upstream 3571 18396227 ~ 18432150 (+)
rrs1 rrs1,LOC107590198,LOC107721889 coding upstream 12161 18420986 ~ 18423560 (+)
trim55b trim55,LOC107590338,LOC107663638 coding upstream 44856 18380291 ~ 18390865 (+)
trnaa-agc_16 NA coding upstream 55707 18379942 ~ 18380014 (+)
trnaa-agc_15 NA coding upstream 56347 18379302 ~ 18379374 (+)
sgk3 sgk3,LOC107721888,LOC107663688,LOC107666631,LOC107705243,LOC107590197 coding downstream 15701 18453107 ~ 18467245 (+)
pign pign,LOC107663715,LOC107721925,LOC107666639,LOC107705240 coding downstream 66412 18503818 ~ 18523294 (+)
LOC113541230 NA coding downstream 85748 18523154 ~ 18527695 (+)
hnf4g hnf4g,LOC107586790,LOC107666612 coding downstream 93069 18530475 ~ 18542760 (+)
zfhx4 zfhx4,LOC107666618,LOC107721891,LOC107705239,LOC107590192 coding downstream 295554 18732960 ~ 18788585 (+)
G334120 NA non-coding upstream 110836 18296643 ~ 18324885 (+)
G334077 NA non-coding upstream 232041 18203063 ~ 18203680 (+)
G334078 NA non-coding upstream 232816 18200395 ~ 18202905 (+)
G334032 NA non-coding upstream 326917 18085319 ~ 18108804 (+)
G334028 NA non-coding upstream 356351 18079151 ~ 18079370 (+)
G334210 NA non-coding downstream 1743 18439149 ~ 18439446 (+)
G334211 mybl1 non-coding downstream 2849 18440255 ~ 18440656 (+)
G334219 NA non-coding downstream 63377 18500783 ~ 18530907 (+)
LOC113541128 NA non-coding downstream 105956 18543362 ~ 18681823 (+)
G334345 NA non-coding downstream 241469 18678875 ~ 18738178 (+)
mtfr1 mtfr1 other upstream 112426 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 442707 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 639200 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 893334 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 1133717 17285082 ~ 17302004 (+)
mcmdc2 mcmdc2 other downstream 30472 18467878 ~ 18486009 (+)
G334373 NA other downstream 255743 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 274642 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 880451 19317857 ~ 19427936 (+)
G334838 NA other downstream 1138705 19576111 ~ 19577073 (+)

Expression


Co-expression Network