G334210


Basic Information

Item Value
gene id G334210
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18439149 ~ 18439446 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395830
GTTTAGGATTATTTTGGATACTGATTACTACAGCTCTGCTCTCACCTGTGCAACACTGCTGATCTGCTGCTGAGGGAACAGTTGCACATTGAGACAGTCTTTCCCCCAACTGTCCAATAGCAGGGACTTCCTCACCTTCCTGGCAGGAGCATCCATCTTTTACATCAGCcaaacaatgaaagaaaaaagtattcGTTTGGGTTAAACACTACAATGTACAGTTCATAATGAGAGAATGATCAGCATGGAAGTGCTGTGTACCTCATACACTCTTTGTTCAGGCTGTCCATGAATGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395830 True 298 lncRNA 0.43 1 18439149 18439446

Neighbor

gene id symbol gene type direction distance location
si:dkey-97a13.12 NA coding upstream 6999 18396227 ~ 18432150 (+)
rrs1 rrs1,LOC107590198,LOC107721889 coding upstream 15589 18420986 ~ 18423560 (+)
trim55b trim55,LOC107590338,LOC107663638 coding upstream 48284 18380291 ~ 18390865 (+)
trnaa-agc_16 NA coding upstream 59135 18379942 ~ 18380014 (+)
trnaa-agc_15 NA coding upstream 59775 18379302 ~ 18379374 (+)
sgk3 sgk3,LOC107721888,LOC107663688,LOC107666631,LOC107705243,LOC107590197 coding downstream 13661 18453107 ~ 18467245 (+)
pign pign,LOC107663715,LOC107721925,LOC107666639,LOC107705240 coding downstream 64372 18503818 ~ 18523294 (+)
LOC113541230 NA coding downstream 83708 18523154 ~ 18527695 (+)
hnf4g hnf4g,LOC107586790,LOC107666612 coding downstream 91029 18530475 ~ 18542760 (+)
zfhx4 zfhx4,LOC107666618,LOC107721891,LOC107705239,LOC107590192 coding downstream 293514 18732960 ~ 18788585 (+)
G334209 NA non-coding upstream 1743 18435721 ~ 18437406 (+)
G334120 NA non-coding upstream 114264 18296643 ~ 18324885 (+)
G334077 NA non-coding upstream 235469 18203063 ~ 18203680 (+)
G334078 NA non-coding upstream 236244 18200395 ~ 18202905 (+)
G334032 NA non-coding upstream 330345 18085319 ~ 18108804 (+)
G334211 mybl1 non-coding downstream 809 18440255 ~ 18440656 (+)
G334219 NA non-coding downstream 61337 18500783 ~ 18530907 (+)
LOC113541128 NA non-coding downstream 103916 18543362 ~ 18681823 (+)
G334345 NA non-coding downstream 239429 18678875 ~ 18738178 (+)
G334371 NA non-coding downstream 249313 18688759 ~ 18726730 (+)
mtfr1 mtfr1 other upstream 115854 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 446135 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 642628 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 896762 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 1137145 17285082 ~ 17302004 (+)
mcmdc2 mcmdc2 other downstream 28432 18467878 ~ 18486009 (+)
G334373 NA other downstream 253703 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 272602 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 878411 19317857 ~ 19427936 (+)
G334838 NA other downstream 1136665 19576111 ~ 19577073 (+)

Expression


Co-expression Network