G334219


Basic Information

Item Value
gene id G334219
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18500783 ~ 18530907 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395839
ATTCTAGTTGACTGTCTTTATTCTGGACTCAGACTCAGTATTAGTGGACACTTGTTTAGGATTGTTATTTATTGCTGttgtgctgtttgtttatttaaattactgATGGCTGTAAACAAGGCGCTTCATTAACACCAGCCTGAGCCGCCACCGAGCACAACCTCATCCACTGCTACTCAACTCTTTCGTCCAGGGTTTGGCTGCGAGGATttcctgctgctgttttttgtcatatttgtaaATCTCGTCGATGCTCTGAACTTCTTGGATGCTGTTTGAAAGCTCCCAGGTCTTCTGAGCTATACTGCTCCCGGCCATAGCTAGCTTAAAGCTAAAGCTAACCGCTGTCTCCCAATGCAGCTTCTGTGGAGCTGTATATgattacaaaacacacagaacaaatTAGAGATAAGTCACAGAACTAGTATGAAGCTGGCTAACTGGTCTGCGAAATGGCATTAAATTTAGaagtatataatttatacaatcCAAGACTTTAGCTTGCTAGCTGCTAGCTACTAGCGCCTGCTGCGTCTTCTTCTACGGAAAATGGCTGTGCTGATGTTATGAGGTTGCCAGATCCGGCTATTAATCCCTAAATTTGGGCTTTCGATTACTTGCtgaataataatataagtatTGAGAAAGACTATGAGATTTTCCTTTGActctgagaaat
>TU395840
TGTTTGGCATTCTCTATATAAGCAGCCATGTACTCGTAAGCAGCAGCCTGGGCATTCACTCTGGTCTCGGTGCCTTCCACAGGCAGAGCAAAGCTGTCCATGATCATCATGGTCTCTCCGTCCACCTTCCCCAGCATGAGCCCCATCACCTCCAGGTTCCCGCCGGAGCGCGCGTGCATCACCATCTTCAGCAGGGCCAGCGCCGAGATCTTgcagtatttaaaataatgatggCTTTCGTCCAGGGTTTGGCTGCGAGGATttcctgctgctgttttttgtcatatttgtaaATCTCGTCGATGCTCTGAACTTCTTGGATGCTGTTTGAAAGCTCCCAGGTCTTCTGAGCTATACTGCTCCCGGCCATAGCTAGCTTAAAGCTAAAGCTAACCGCTGTCTCCCAATGCAGCTTCTGTGGAGCTGTATATgattacaaaacacacagaacaaatTAGAGATAAGTCACAGAACTAGTATGAAGCTGGCTAACTGGTCTGCGAAATGGCATTAAATTTAGaagtatataatttatacaatcCAAGACTTTAGCTTGCTAGCTGCTAGCTACTAGCGCCTGCTGCGTCTTCTTCTACGGAAAATGGCTGTGCTGATGTTATGAGGTTGCCAGATCCGGCTATTAATCCCTAAATTTGGGCTTTCGATTACTTGCtgaataataatataagtatTGAGAAAGACTATGAGATTTTCCTTTGActctgagaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395839 False 679 lncRNA 0.41 2 18501508 18530907
TU395840 True 731 lncRNA 0.46 3 18500783 18530907

Neighbor

gene id symbol gene type direction distance location
sgk3 sgk3,LOC107721888,LOC107663688,LOC107666631,LOC107705243,LOC107590197 coding upstream 33538 18453107 ~ 18467245 (+)
si:dkey-97a13.12 NA coding upstream 68633 18396227 ~ 18432150 (+)
rrs1 rrs1,LOC107590198,LOC107721889 coding upstream 77223 18420986 ~ 18423560 (+)
trim55b trim55,LOC107590338,LOC107663638 coding upstream 109918 18380291 ~ 18390865 (+)
trnaa-agc_16 NA coding upstream 120769 18379942 ~ 18380014 (+)
zfhx4 zfhx4,LOC107666618,LOC107721891,LOC107705239,LOC107590192 coding downstream 202053 18732960 ~ 18788585 (+)
LOC113541280 LOC108256606 coding downstream 285327 18816234 ~ 18931272 (+)
zc2hc1a zc2hc1a coding downstream 490099 19021006 ~ 19033661 (+)
ctnnd2a ctnnd2a,LOC108256437,LOC108438556,LOC107716425 coding downstream 529982 19060889 ~ 19328125 (+)
LOC117595764 NA coding downstream 801267 19332174 ~ 19335280 (+)
G334211 mybl1 non-coding upstream 60127 18440255 ~ 18440656 (+)
G334210 NA non-coding upstream 61337 18439149 ~ 18439446 (+)
G334209 NA non-coding upstream 63377 18435721 ~ 18437406 (+)
G334120 NA non-coding upstream 175898 18296643 ~ 18324885 (+)
G334077 NA non-coding upstream 297103 18203063 ~ 18203680 (+)
LOC113541128 NA non-coding downstream 12455 18543362 ~ 18681823 (+)
G334345 NA non-coding downstream 147968 18678875 ~ 18738178 (+)
G334371 NA non-coding downstream 157852 18688759 ~ 18726730 (+)
LOC117595807 NA non-coding downstream 174385 18705292 ~ 18706093 (+)
G334386 NA non-coding downstream 230182 18761089 ~ 18854003 (+)
mcmdc2 mcmdc2 other upstream 14774 18467878 ~ 18486009 (+)
mtfr1 mtfr1 other upstream 177488 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 507769 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 704262 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 958396 17535944 ~ 17542387 (+)
G334373 NA other downstream 162242 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 181141 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 786950 19317857 ~ 19427936 (+)
G334838 NA other downstream 1045204 19576111 ~ 19577073 (+)
cip2a kiaa1524 other downstream 1105961 19636868 ~ 19703804 (+)

Expression


Co-expression Network