LOC113541128


Basic Information

Item Value
gene id LOC113541128
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18543362 ~ 18681823 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395933
ctggcaaccctgaccaAAAGCAGCACGCGACAAGTCTCTACTTGTCTATGGCGCGTGCGTGTTTTGTTTAATTGATTAGCTGAAGCTGATTAACgtcatgaaaaaaatctttcagtgcacattttatggaaaaaacacagacagaaaccgaAGTTTAGCCTCAGTAACTTGTTTATTTACGTTTATCTGTCGGTATTCTACTAAATATCGTCGAATATAGATGCTTttctaaaatgtgaaaattgaaAGTTTTAGCTAACGCCACCTGGTGTACATTAAGGCTTGAGTAACGGTCCGGAAGTCCTCAGGTGTGTCCAGTGAAGTAGAGGCAGTGCTTCTGCGGGCAGTGTGTTGGTCTCCAGTTCTTCAGAGACGAGGTTGAACTCCTCTGCACAGCTGACAGATTCAGGAATTGGCTGAGGAGCTGCACTTGTCTGCCGCACAACAACTCTGTCCTCCGATGAATCACGGCTCGCCATAAACCGATGCCTATGGAATGAAGGTTTCATATCAGAGATCTGGGGCCATAAATGTCCTCTCCTGCCCCTGTTCTAGTGTAATCACATGCTGTTGCACAGGCCATGTCCACAGAGCCGGCCCTAAGTGCCTCAAACAGTCTAAAAAACCATCAGGACCGACTTGAAAAAGGAAACCGCCTCTCCACGCAGGGCACTCTGCGAAGGACACGTCGCATACAATCACCTGTGAAGCTGCAGAGATGAGAGAAGATATTTGTGCACTTTTGCATTCTCATGAATCTGTTTACGCGCACGGCACGTTGCGGCATACTGTAAACAACAATGAAGAAACGGCACGGGGTGACAGAAAGATCTAGAGCAATTCATTTCAGAGGAAAACATCCGTCTGTGGCGCAGGAGGCAGCCATTGCTCTTGCTTTTTAATATTACTTTTCTCATCTCGGAGTAGACGTGAGTGATTTCGACCCAGGCTGTGCGGTGATGACTTGCACAAGGAAAGACGAGCATCAAAACCCGTTGGTGTCAGACTAATCCGTTTGAAAGTTGCCTCTGATTGTTTCTGAATTcttaaatttgtaatttattctCATGAAATGTTGTTAGGCAGAGGTCTGGTGTGGGGGCTAAAGCCTGACcttgggaggtgtgtgtgtgtgtgtgtgtgtgtgtgtttcaaatcAGCGGCACCTCGTGGGAGCTGAAGTGACTGACTGCTCCTGGCTGCAGACttgcacacacaccatcattaaTGCGTATTATGATTCCTCCAGTGTCAGTAGAGGAGACAAACAGTCACAGTGTGAATCTTCCCCTCATCCTCGtactctctttcttcctctctctctctctctctctctctctctctctctctctctctctgtctccctctagCCTGCCGAGCCAGCAAAAATGCAACAGAGAATTATTCAGGATTCAGAATTTTTTCTGTCATCTCTGCCATCTACTGATAACAAAGCCACAAGCTAATACGGTTTGATTTGTTTGTCACTCATTTTTCATGTGACCTTTCCCTGGTATCATTAATACAGCTGGGGGGAGGAGTGGAGTGAGATGgcgagatgagaggagagagctGCCAGAGGCTTTAACAAGTACTAGTGGTCAGATATAGCAATTTATGCTTTCATTCAATCCGGCAGCGGCTGGAGGAGAGGGATTGTTATTAAAATCTGAAATTACTGCCTATGACCTGCCACCTGGAATTTGCAGCTGGCCGCTCTGAGATGAGCACCGTGTGGTTAAGCAAATCCCTGCCCAAATTATGGTGTGAATAAAATGCCACACTGGTGTCCTAATCTTCTCCATAGGCGTGTTCCTGCCTAAGAGACTCTTTAGTGCACTATTTAATGCACTAGACACTAAAgaaattaaatctaaatgtgAGTGATAACCTAAATGATCTGATTATGTAAAATAGATTTtgaaaaatcagattttcttttttaatataaaggTTGTGTGCAgtatcatattatttttacGTAAAGTTATGTGTTATATTTTAGGAGATATATTATGAGCTGTATTGAAGCA
>XR_003404150.2
GACAAGTCTCTACTTGTCTATGGCGCGTGCGTGTTTTGTTTAATTGATTAGCTGAAGCTGATTAACgtcatgaaaaaaatctttcagtgcacattttatggaaaaaacacagacagaaaccgaAGTTTAGCCTCAGTAACTTGTTTATTTACGTTTATCTGTCGGTATTCTACTAAATATCGTCGAATATAGATGCTTttctaaaatgtgaaaattgaaAGTTTTAGCTAACGCCACCTGGTGTACATTAAGGCTTGAGTAACGGTCCGGAAGTCCTCAGGTGTGTCCAGgtgttcagaTGAGTTGAGATCTGATGACCGTGAAGGCCATTCATCAGTGAACCCTCGTGCCCTGGGGCTGGGGGCAGAGTCTTCctgaagagaccacgcccatcaagATAGAAATAATTCATCGTAGAATAAAGTGAAGTAGAGGCAGTGCTTCTGCGGGCAGTGTGTTGGTCTCCAGTTCTTCAGAGACGAGGTTGAACTCCTCTGCACAGCTGACAGGATACGACTTTTGGATCCAGTGTGACATTTCCGTATCCTGCCAGTATTTATCACTTTGTCATTATAAAGACCATATACTGGGACAGACCGTGACATCGTAACACTCCAACCTTGCTGTGATGTTCCTCACTGACCTGTCATCTTTTGAGGGATGTCTGCTGATCTTCAGCCTGGCCTAATCCCCAATCACGGCCATGCTCATGAATTAAATATCTATAATTACACGTAGATGCTGCAGTTAGCAAGCACCTCGGTGTGTGACTTTCTTGCAGCTAGCTCAGACTGATGTTTGATTAAAGCCACGGCTTTGACAAATTGGGACAAATTCATTAGCCGGGGGTGTGCTTACAGCTTATAGCTTATAGCACCTGAGGTCAGGGCCTCTAGTCCATTAAATAAGGAAGGAGTGTCCAAGGCTGAGTGCAGACGTCGTGCCGTGGAAAAACTTTGCTTCTTCTTAAACTTAATAAATCCCGACATCTTATGGGGCATCGTTTGGCCTGAGCCGCTACAGGTGGTCCAGTGTGGGAGGTTTAAAGAGATCTGGAGGATCTGAACATCTAAAAGAGATCTCGGGGATGGAGAGAGAACTTCCATCTCATGGCATCTCCAGCAGCTTGCGATGAGCAAAATATGATAAAGCCCCTGCTGGGTTAAATAGGGCTGGCAAATGTCGAGACCCGTAAAGAAGATGAAGCTGGATAAAGTCTCCGGAGCTCAGATGTGAACACTGAGAGCCAGGAACCAGGAGCTTGAAACTTAACCCCCGAAGAGACAGCTCAGTAGAaggtatgcgtgtgtgtgtgtttgtgtgtgtgtgtgtgtatgacaaaGGCTGTGGATGAAGGAGAAAGCCTACCTACAAAGCCCGGGCTGTCTAGCAGGATTTGGGTGCTGTGTTGCTGCTGGAGATGATGCTCCTCTTTGATACCCCAGGAGAGATTATAGCAGGAGAGAGGAGTTAAAAGTAGCCTATAAACATTCTAGCTCCCGTCTCCAAGGCTCATGCTTCTGCA
>XR_004576989.1
GACAAGTCTCTACTTGTCTATGGCGCGTGCGTGTTTTGTTTAATTGATTAGCTGAAGCTGATTAACgtcatgaaaaaaatctttcagtgcacattttatggaaaaaacacagacagaaaccgaAGTTTAGCCTCAGTAACTTGTTTATTTACGTTTATCTGTCGGTATTCTACTAAATATCGTCGAATATAGATGCTTttctaaaatgtgaaaattgaaAGTTTTAGCTAACGCCACCTGGTGTACATTAAGGCTTGAGTAACGGTCCGGAAGTCCTCAGGTGTGTCCAGgtgttcagaTGAGTTGAGATCTGATGACCGTGAAGGCCATTCATCAGTGAACCCTCGTGCCCTGGGGCTGGGGGCAGAGTCTTCctgaagagaccacgcccatcaagATAGAAATAATTCATCGTAGAATAAAGTGAAGTAGAGGCAGTGCTTCTGCGGGCAGTGTGTTGGTCTCCAGTTCTTCAGAGACGAGGTTGAACTCCTCTGCACAGCTGACAGATTCAGGAATTGGCTGAGGAGCTGCACTTGTCTGCCGCACAACAACTCTGTCCTCCGATGAATCACGGCTCGCCATAAACCGATGCCTATGGAATGAAGGTTTCATATCAGAGATCTGGGGCCATAAATGTCCTCTCCTGCCCCTGTTCTAGTGTAATCACATGCTGTTGCACAGGCCATGTCCACAGAGCCGGCCCTAAGTGCCTCAAACAGTCTAAAAAACCATCAGGACCGACTTGAAAAAGGAAACCGCCTCTCCACGCAGGGCACTCTGCGAAGGACACGTCGCATACAATCACCTGTGAAGCTGCAGAGATGAGAGAAGATATTTGTGCACTTTTGCATTCTCATGAATCTGTTTACGCGCACGGCACGTTGCGGCATACTGTAAACAACAATGAAGAAACGGCACGGGGTGACAGAAAGATCTAGAGCAATTCATTTCAGAGGAAAACATCCGTCTGTGGCGCAGGAGGCAGCCATTGCTCTTGCTTTTTAATATTACTTTTCTCATCTCGGAGTAGACGTGAGTGATTTCGACCCAGGCTGTGCGGTGATGACTTGCACAAGGAAAGACGAGCATCAAAACCCGTTGGTGTCAGACTAATCCGTTTGAAAGTTGCCTCTGATTGTTTCTGAATTcttaaatttgtaatttattctCATGAAATGTTGTTAGGCAGAGGTCTGGTGTGGGGGCTAAAGCCTGACcttgggaggtgtgtgtgtgtgtgtgtgtgtgtgtgtttcaaatcAGCGGCACCTCGTGGGAGCTGAAGTGACTGACTGCTCCTGGCTGCAGACttgcacacacaccatcattaaTGCGTATTATGATTCCTCCAGTGTCAGTAGAGGAGACAAACAGTCACAGTGTGAATCTTCCCCTCATCCTCGtactctctttcttcctctctctctctctctctctctctctctctctctctctctctctgtctccctctagCCTGCCGAGCCAGCAAAAATGCAACAGAGAATTATTCAGGATTCAGAATTTTTTCTGTCATCTCTGCCATCTACTGATAACAAAGCCACAAGCTAATACGGTTTGATTTGTTTGTCACTCATTTTTCATGTGACCTTTCCCTGGTATCATTAATACAGCTGGGGGGAGGAGTGGAGTGAGATGgcgagatgagaggagagagctGCCAGAGGCTTTAACAAGTACTAGTGGTCAGATATAGCAATTTATGCTTTCATTCAATCCGGCAGCGGCTGGAGGAGAGGGATTGTTATTAAAATCTGAAATTACTGCCTATGACCTGCCACCTGGAATTTGCAGCTGGCCGCTCTGAGATGAGCACCGTGTGGTTAAGCAAATCCCTGCCCAAATTATGGTGTGAATAAAATGCCACACTGGTGTCCTAATCTTCTCCATAGGCGTGTTCCTGCCTAAGAGACTCTTTAGTGCACTATTTAATGCACTAGACACTAAAgaaattaaatctaaatgtgAGTGATAACCTAAATGATCTGATTATGTAAAATAGATTTtgaaaaatcagattttcttttttaatataaaggTTGTGTGCAgtatcatattatttttacGTAAAGTTATGTGTTATATTTTAGGAGATATATTATGAGCTGTATTGAAGCAGtaattaaattgttatttatattatttatagtatgATCAAACAGCGTAAGCTCACTTgtactataaaaatatattatttgtattcacttaaaaatgaaacaaatacatTCCTTACGTGTTAGAGCTaatctataattttgtttattatgcaTTGGAATAATTCTGACTGTTGCAGCTAAAAtattattgaattttattttatacttttatatttttattattgaattattaattattattattattactaaatatgattatttattgtaagcaattttaaaacctttttgtgTTCCTTTATAGAGATTTTGATCAGTGATAGTCATATTTTGAGATTCTCTCCTGATTTTATAATTTGCAGCAATATTTAAGTATTAGCCTGTAATAACCTGAAAGACACAAATGCACTTAACTGAATTTATTTTCCAGCCTCACGTTGTTTGTTTTCTTCCCTCAATTAACGGCTGTCCCTCCTTCTCtcattaacatgattatgagGGACAGAGGCGAGGCCTGTTGGAGACATTTGAGTTTCCATGTAAACATATCAATCTTATGCGCGGAAAGCCCGGGCCTCCTCGCGCTGCTCCTCCCGTGGCGAAAATGGCCTGCTACTACCCATCAGCCCGGCGGTTGCCATGGTGACCAGGGTCAAGAAACCTGCCTCCCTCTACCCTCCCCTTCGCTCACCCAAGGCTTGCTCATGTCACTTGTGAAACtatgaattttatatacaggTCAGGAGATGCATATCAGAGAAATAAGCGGTGAATCGGACCATGATGACAGCCCAGTGCTCAGATGTCCTTGAAATTCACATTtcaatcctctctctctctctctctctctctctctctctctctcacccaaaAATGACTCTTGGATCCTCTTGTTGCTTTTAGGCACAATTAGTATTTTCTGAATGCGTCTGcaagatggacagagagaaagggggaaaaagacagagagacatggggaatgattttacatttttaagtcaagtttttattttctttaaagagGTAATATAATGGTTTGCAGCATTATTACAAGGAGATTTTACTAAGCACTTCAGGATTTCGGTTATTTTAAGTGCGTTGTgccaatagattttttttattcttttattttcataataaaagAAGGCATTGTATGGGTTATAAAGCTTTGACATGTAAAACCTTTTATATGGATCAAATCTTTTTAGTTTCTTTAACTAATggtcttttcttttaaaaccacTCAAAAACCCAAACCTTTCAAAGCCTGTACAGATAATATCTGAATTAGACAACCTGCTGTATTTTACATATGTTCTTGtgataactataactatatgtgtcttaaaatatttattctacATCTCATAAATTTTTAAATCGATTTCTGTATGTGTCACCAGACAAACTGTGATCGTTGATGCCATAAATATTTGGCGTAATGTCATATTAAATTAGCTTAAAATGCTAACAAAGTGTtatctgtaattaaaaatgtagaCAGAATTATTGCCATTATTCATTTATGCAAAGatttgtggtgttgtgtgtgaattatgttatatattatatattcgatattatatatgttatatcgAAGACCATTTAATTGCTGTTAAATCAGAATTCAAATAGCATATTGATCTCACCTCGGACTTGacctttttataaatttttcaCCTGATGAGTAGAAAGGTCTGCtaatcagaaatgttttatctAATGGCATACAAGGATTGTCAGTCATTCTCCCTAGAATGGGGTTTTTATGACAGGCTCCCTATCATCCCTCCTCTTCGACGTTGCCCTTTTCTGACCTTTTGCGGTGCCCAAACGTGTCTGGGTTATATATCTTCTGTCCCGAGTGCAGCCTGGCCTATTAGCTAGTCTCTAAACCTCCAGTGGAGAGGATCAAGCCTAGGCGTTTCTACACTTCATTCATTTTGTTGCTCCCCAGCGATCGGTGGCCCTTGCCTCCAAATCCCTCCTTTATAGTGCACTGAAGTGACAAAGGCAGCCTTGTCTTTCATTTCCTTGATGTTCTTCGTACAGCTCGGTGGCTTTTGTGTCGTATTGATGCAAACATTACCATAAACTGCCACCCAGGGACCAGAAACAATTGACTAACTGTTCCCAAATCCAATACACTTCAGCTGGTCATATGCTAAGTGTAAGTTTAGTTAGGTTGAGTGCTAAAAGCACTGTTTCCTGTCCAGCCTGGACCAGCGCTCAGAGAAGGACGCCCGTGCAGGGACGCCTGTACGCACTGACAAAAGGGAATCAAATTTGTCGCACAGAATCCCTGTCTTCATTTCTGATGACTCAAATCCCCCCCCTCTTTCCaattcctctctctcccctcttcatttctctctctttctgtttcggTGGCTCTCACCTTCTGTTCAGGTTCAACAATAGTGGGATTACACTTTAAAGAAGCTGCGCTTCAGCTGAGAAAGAGGGATTTGGCTGGGATGAGTGTTTAAAATGAACCGCCTTTGAAACCATGGACATTAATTACCGCCCTGGCACAGAGTGACAAATACTTCACTCATTACCAATGGAAATCgtgggaggaaggaaggagggcGGGGATTGTGGGGGAATTTCAAAAAGTTTCTTGTGTTGTAAATGTGAAATGGTGCccgaccttttttttttctctctgctgcttAATGGGAGGGTCATTTGCCTCTCGGAACTTTGGTGGGGATCCCGGAGTCAAGCTTTATAGAGAGGGGCTTTATTCAGTTTCCGATacatggaacaaaaaaaaaaaaaaaa
>XR_004576990.1
GACAAGTCTCTACTTGTCTATGGCGCGTGCGTGTTTTGTTTAATTGATTAGCTGAAGCTGATTAACgtcatgaaaaaaatctttcagtgcacattttatggaaaaaacacagacagaaaccgaAGTTTAGCCTCAGTAACTTGTTTATTTACGTTTATCTGTCGGTATTCTACTAAATATCGTCGAATATAGATGCTTttctaaaatgtgaaaattgaaAGTTTTAGCTAACGCCACCTGGTGTACATTAAGGCTTGAGTAACGGTCCGGAAGTCCTCAGGTGTGTCCAGgtgttcagaTGAGTTGAGATCTGATGACCGTGAAGGCCATTCATCAGTGAACCCTCGTGCCCTGGGGCTGGGGGCAGAGTCTTCctgaagagaccacgcccatcaagATAGAAATAATTCATCGTAGAATAAAGTGAAGTAGAGGCAGTGCTTCTGCGGGCAGTGTGTTGGTCTCCAGTTCTTCAGAGACGAGGTTGAACTCCTCTGCACAGCTGACAGGATACGACTTTTGGATCCAGTGTGACATTTCCGTATCCTGCCAGTATTTATCACTTTGTCATTATAAAGACCATATACTGGGACAGACCGTGACATCGTAACACTCCAACCTTGCTGTGATGTTCCTCACTGACCTGTCATCTTTTGAGGGATGTCTGCTGATCTTCAGCCTGGCCTAATCCCCAATCACGGCCATGCTCATGAATTAAATATCTATAATTACACGTAGTGTAGTATTATCATCAGACATCCacgctctctctccctgtccccCATCCCCCAGAATTTTTTGTTGCACAGCCTTGTCTCATTCCCTGTTGTATTCATGAGGGTGGCCCCAATAAGGCAGGAGCGTCTGGGAGGCAATAAATAGGAATATGAAGCGTTTATTGCTGCTGCAATGATTTCTGAGCTGGACTCTGATGAGAGCTGGGATCACTGGAGCGAGCAGAGATGCATGTATACAGCGTACACACCACACCTTTACGCACAGCAAGGTGTAcatcagtgtggtgtgtgtatattaaaataat

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395933 False 2033 lncRNA 0.44 3 18543362 18581969
XR_003404150.2 False 1525 lncRNA 0.46 6 18543390 18681823
XR_004576989.1 True 4925 lncRNA 0.41 4 18543390 18584755
XR_004576990.1 False 1042 lncRNA 0.44 6 18543390 18680498

Neighbor

gene id symbol gene type direction distance location
hnf4g hnf4g,LOC107586790,LOC107666612 coding upstream 602 18530475 ~ 18542760 (+)
LOC113541230 NA coding upstream 15667 18523154 ~ 18527695 (+)
pign pign,LOC107663715,LOC107721925,LOC107666639,LOC107705240 coding upstream 20068 18503818 ~ 18523294 (+)
sgk3 sgk3,LOC107721888,LOC107663688,LOC107666631,LOC107705243,LOC107590197 coding upstream 76117 18453107 ~ 18467245 (+)
si:dkey-97a13.12 NA coding upstream 111212 18396227 ~ 18432150 (+)
zfhx4 zfhx4,LOC107666618,LOC107721891,LOC107705239,LOC107590192 coding downstream 51137 18732960 ~ 18788585 (+)
LOC113541280 LOC108256606 coding downstream 134411 18816234 ~ 18931272 (+)
zc2hc1a zc2hc1a coding downstream 339183 19021006 ~ 19033661 (+)
ctnnd2a ctnnd2a,LOC108256437,LOC108438556,LOC107716425 coding downstream 379066 19060889 ~ 19328125 (+)
LOC117595764 NA coding downstream 650351 19332174 ~ 19335280 (+)
G334219 NA non-coding upstream 12455 18500783 ~ 18530907 (+)
G334211 mybl1 non-coding upstream 102706 18440255 ~ 18440656 (+)
G334210 NA non-coding upstream 103916 18439149 ~ 18439446 (+)
G334209 NA non-coding upstream 105956 18435721 ~ 18437406 (+)
G334120 NA non-coding upstream 218477 18296643 ~ 18324885 (+)
G334371 NA non-coding downstream 6936 18688759 ~ 18726730 (+)
LOC117595807 NA non-coding downstream 23469 18705292 ~ 18706093 (+)
G334386 NA non-coding downstream 79266 18761089 ~ 18854003 (+)
G334573 NA non-coding downstream 250679 18932502 ~ 18932710 (+)
G334575 NA non-coding downstream 251226 18933049 ~ 18933251 (+)
mcmdc2 mcmdc2 other upstream 57353 18467878 ~ 18486009 (+)
mtfr1 mtfr1 other upstream 220067 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 550348 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 746841 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 1000975 17535944 ~ 17542387 (+)
G334373 NA other downstream 11326 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 30225 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 636034 19317857 ~ 19427936 (+)
G334838 NA other downstream 894288 19576111 ~ 19577073 (+)
cip2a kiaa1524 other downstream 955045 19636868 ~ 19703804 (+)

Expression


Co-expression Network