G334345


Basic Information

Item Value
gene id G334345
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18678875 ~ 18738178 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395987
aaaatgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagagagagagagagagaaagagaagactCACTTTCTTCATGCATTCACTCAGTGTTAGTGATGTGGCGTTAGTAACTGAGCAACAAAGAGCAAATCCTCTGACGAGTGAAGTCAGCATGAGCCAAATGAAGCCCTGAAAGAATCGCATGTGGAATTTTGAGGCCTGGCATTAAAAACCCTGTCCATGGGAATGTTTTGAAATCCTTAGcagtttaaaacttttttttcaccccctctctttttttcataaggGCTGCACTAATTCTCTAAGCAAACAAAAAAGGATTCCATGGCAACAAAGAGCATTGGAGATCATGTAGGAAGACAAGTAGACTGAAGATTAGGAGGTGAGAAAGGCCTAGCTTAGTCATGAGCTCAATAGCATGTGGTTGTTGCTGCATGCATAGACATGGCTGTGGGTGCAGATTGTTTGCACACTTGTGTACATGAGAGTGGGTCACTGCTGGCTTCATggagattttcattttttaaatcgtCGGCatcaaatataattaaataggCGTCACATTACAATTTCACCAATCCTgataacattaaaacacttaTATGTTGTGTCTGGTagtgaaatgtaatttatagtgatgtttttaaaataatgagtcTGAGCATGACGTGGTcagtaatacttttttttttttaacccattccTTTCTACTGACTCAGAATGAAAATAGCAGGTGGCTGTTGTGGGGATTAAAATGGTGCCATTGTTTTGCGTTCACGTGTCGGTAAATCCAGCAGCAGCATGACAAAGCGTACTCTTTCTTTGACATTTGAaagtccaaaaaaaagaaaataatgaagtaATCTAATCAAAGCTTTATTTCAAGAGGAGATGATTCAGGAGAAAGGCCTAGCACAAAAAGGCATGAAAGTGATTTCTAAGTATTTATTCAGCTTTTGTAAATGTACAGAGCGAGAGCAGTGTCCATTCGTCCTGCACTCTTGCctgcctcatttttttttaatgccaggAGGGGGAAATCTGTTTTACAGATGCAGCCTTTAATGTGTTTGGCAGAAATGAGAATATTTCACTCATAGACATATGGTAgtaaagcttaaaaaaatagaGACTTCTTTATTTGACCAGAAAAACACCTCTCTTTTTATGTTTAAAGGTGAAAGGCACATGGGATTGGGTAGTTTGGCCAGGCACACAAAAGAACAAAGCGTTGACGACATTACCACATGGACCTGGAATACTAAATATCTTTATGGCTAAGAAATGACTGAAGATACAAATGAAAAATCCCTGCATATTcagagttttatttttgcttctgCATATTTCCAAAAGGAATCAGTGTCATTTCCACATCAaggaataaaattatattagcagaagatgacattttttcaggtaaatacaacaaacaaaaaggctTTGGATTCTCATAGGCTGTTACACAACGCCATACCCAAAAACGAATGTGTGTTACTGTTTGGATTCAGCctataataatgatatatagtcatgatataattattaataataaacactcaAATAAATGCAGATGTGGGACGGTATAAATCTGTCATGACCATTCAAAGGCAGCGTAACGCTCAGTTAGGAAATGGCAGGAAATGTGTGTTTCTCCAAAGAAAGGATTTGCACTGGGCATTTGGGTCATTTAGAGCCAAGAATGTTCATGGTCAGTGTGTCGGAGTCAGAGTGTGAGCGAGGAAACTCAAATACCAAACCGCACCTGTTCATCAGCtgggcctctctctctccttctaacatatacacacacacacacacacacacacacacactcacaccctctctctttctctttggaTCTTGatgtccagtgtgtgtgcatccaAGTCTGCTAGCCAGGAGTTATGAAGTGTTTGATTACAGCAGTCGCAGCCAATCCGTCATCAGCGAAGCAGAATGCTGTGTCTGTCTGGAGCCCACCACATTATTTccatatttgtatttgtcttCCGTTTCTCCCTCATCTCCTCCTctgcctcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395987 True 2048 lncRNA 0.39 2 18678875 18738178

Neighbor

gene id symbol gene type direction distance location
hnf4g hnf4g,LOC107586790,LOC107666612 coding upstream 136115 18530475 ~ 18542760 (+)
LOC113541230 NA coding upstream 151180 18523154 ~ 18527695 (+)
pign pign,LOC107663715,LOC107721925,LOC107666639,LOC107705240 coding upstream 155581 18503818 ~ 18523294 (+)
sgk3 sgk3,LOC107721888,LOC107663688,LOC107666631,LOC107705243,LOC107590197 coding upstream 211630 18453107 ~ 18467245 (+)
rrs1 rrs1,LOC107590198,LOC107721889 coding upstream 255315 18420986 ~ 18423560 (+)
LOC113541280 LOC108256606 coding downstream 78056 18816234 ~ 18931272 (+)
zc2hc1a zc2hc1a coding downstream 282828 19021006 ~ 19033661 (+)
ctnnd2a ctnnd2a,LOC108256437,LOC108438556,LOC107716425 coding downstream 322711 19060889 ~ 19328125 (+)
LOC117595764 NA coding downstream 593996 19332174 ~ 19335280 (+)
LOC117595802 NA coding downstream 596848 19335026 ~ 19336650 (+)
G334219 NA non-coding upstream 147968 18500783 ~ 18530907 (+)
G334211 mybl1 non-coding upstream 238219 18440255 ~ 18440656 (+)
G334210 NA non-coding upstream 239429 18439149 ~ 18439446 (+)
G334209 NA non-coding upstream 241469 18435721 ~ 18437406 (+)
G334120 NA non-coding upstream 353990 18296643 ~ 18324885 (+)
G334386 NA non-coding downstream 22911 18761089 ~ 18854003 (+)
G334573 NA non-coding downstream 194324 18932502 ~ 18932710 (+)
G334575 NA non-coding downstream 194871 18933049 ~ 18933251 (+)
G334733 NA non-coding downstream 607711 19345889 ~ 19351752 (+)
LOC117595782 NA non-coding downstream 783187 19521365 ~ 19522260 (+)
mcmdc2 mcmdc2 other upstream 192866 18467878 ~ 18486009 (+)
mtfr1 mtfr1 other upstream 355580 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 685861 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 882354 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 1136488 17535944 ~ 17542387 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 579679 19317857 ~ 19427936 (+)
G334838 NA other downstream 837933 19576111 ~ 19577073 (+)
cip2a kiaa1524 other downstream 898690 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other downstream 940303 19678481 ~ 19683870 (+)
G335231 NA other downstream 1050405 19788583 ~ 19789058 (+)

Expression


Co-expression Network