G334371



Basic Information


Item Value
gene id G334371
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18688759 ~ 18726730 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU396013
GTCCTGCGCCTGCTCCTCCTCTCCTGCCTTCGCGCAAATAGCACTACATAGGAGACAGTTGTTTCTGGCCGCCCCTCCGCCTGTCATGGCTGTCAGACCAAATCCCATGACTTATGGCTTCTCCAGATGTAAGAGATTTCTAAGCTGCCTCGAACAGCCTGCGGTTTTGTggtgtgaaagaaagagagagagagagggagagggagagaggagaggaggatgtggAGGTGGGTCATAACCGATGACTTGCCATCACATGGGCACCAGAAAGAAAAGATGTGAAACCAGATGTGGGGTGAAATAAAAGGCTTAAAGAGGAAGGCCAGTGGAGAACCTGCTCAGAAAAAGTGCCTGCAAGTGTTCCCCTTCAcccctactctctctctctccctctctctcttccccacACAGttcctgtgtgtgaatgttaatgatttttcttctttttctttctctctctctctctctctctcttttttcaacCCCCCTCCCTTTCCACCTCCCTCCCTCGCTCTTCCAGAGACACAGCGCCATTGTTTGTTGCGAGGGCTCTTTTCTTTC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU396013 True 561 lncRNA 0.51 2 18688759 18726730

Neighbor


gene id symbol gene type direction distance location
hnf4g hnf4g,LOC107586790,LOC107666612 coding upstream 145999 18530475 ~ 18542760 (+)
LOC113541230 NA coding upstream 161064 18523154 ~ 18527695 (+)
pign pign,LOC107663715,LOC107721925,LOC107666639,LOC107705240 coding upstream 165465 18503818 ~ 18523294 (+)
sgk3 sgk3,LOC107721888,LOC107663688,LOC107666631,LOC107705243,LOC107590197 coding upstream 221514 18453107 ~ 18467245 (+)
rrs1 rrs1,LOC107590198,LOC107721889 coding upstream 265199 18420986 ~ 18423560 (+)
zfhx4 zfhx4,LOC107666618,LOC107721891,LOC107705239,LOC107590192 coding downstream 6230 18732960 ~ 18788585 (+)
LOC113541280 LOC108256606 coding downstream 89504 18816234 ~ 18931272 (+)
zc2hc1a zc2hc1a coding downstream 294276 19021006 ~ 19033661 (+)
ctnnd2a ctnnd2a,LOC108256437,LOC108438556,LOC107716425 coding downstream 334159 19060889 ~ 19328125 (+)
LOC117595764 NA coding downstream 605444 19332174 ~ 19335280 (+)
LOC113541128 NA non-coding upstream 6936 18543362 ~ 18681823 (+)
G334219 NA non-coding upstream 157852 18500783 ~ 18530907 (+)
G334211 mybl1 non-coding upstream 248103 18440255 ~ 18440656 (+)
G334210 NA non-coding upstream 249313 18439149 ~ 18439446 (+)
G334209 NA non-coding upstream 251353 18435721 ~ 18437406 (+)
G334386 NA non-coding downstream 34359 18761089 ~ 18854003 (+)
G334573 NA non-coding downstream 205772 18932502 ~ 18932710 (+)
G334575 NA non-coding downstream 206319 18933049 ~ 18933251 (+)
G334733 NA non-coding downstream 619159 19345889 ~ 19351752 (+)
LOC117595782 NA non-coding downstream 794635 19521365 ~ 19522260 (+)
mcmdc2 mcmdc2 other upstream 202750 18467878 ~ 18486009 (+)
mtfr1 mtfr1 other upstream 365464 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 695745 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 892238 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 1146372 17535944 ~ 17542387 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 591127 19317857 ~ 19427936 (+)
G334838 NA other downstream 849381 19576111 ~ 19577073 (+)
cip2a kiaa1524 other downstream 910138 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other downstream 951751 19678481 ~ 19683870 (+)
G335231 NA other downstream 1061853 19788583 ~ 19789058 (+)

Expression



Co-expression Network