G334386


Basic Information

Item Value
gene id G334386
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18761089 ~ 18854003 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU396029
tttcttttccataatAGAAAAATCTACAGATGGATTTCTAAAGCTGTGTTCCGAACTTGCTTTAATCATCATCGTACCTTTACCTGATTTAAAACATGAAGATTTTAAAAGGTGCTATACCAGGATGAACACATTCACACGTCCCATGAACACCCAGGCTTTGACATAAACAATACGCAAGTGTGTAGCCTCAGTGTATTCTTTACTAAGGCCATTCCAAATATCATTCTCTATGTTCCAATACACATAAAGGCAATACTGAATAAGTGTGATCCATAGCAATTATAATGAGACAAAGGAAGATGAGGACATTAATttacaacagacacacacatacaggaactaaaccaatgacaagacaagggcggagacaggactgAAGCCAGAACAGAAGCACATGCAGCGCTTGTGGGATTATCATCTCTGTGTACCCATCATTCTCAGAATCTGCTGAAGATACACTCATGAACGACGCATTCCAAAAGTGATAAATAACCACGTCAGCCCAAAATTCAGCCCTGGCTTGTGTTCATACTTAACCCCATCTAGAATAACAGCCATTAAATTCTCACTTTAAAGAGGCTTGAGAGTAATAAGCTTAGTGGGAACAAGTTGTGATGTTTCTAAGGGTCAAAATGATGGCCAGTAGTCCCTCTGCGAATGAGCCAGCAGTACCAGGAAGAATGGGAAGTAACTCTTGTCCTGGTCCATCAGCAGCCCATCAGCCGGTCTCACACACCAGCAGGCCTGTGCTTTTTGTTCTCCCGCAGGTTAATAGAAATGGAGGAGATGGGCCGAGGAAAAGCAATGCAATTTTCTGCTATTTAAGCTTGGGGAGATGGCACTCTTCAGGAAGCACTGGAGAAGTAAGAGGGTGTAATGGGTGTTTGGAAAGAAGGGAGAGCGGACCAACTTACTTGGAGGAGATTCTCAAGATTTTAGGCATGCATGGAAAAAGGAGGAGATGGTGAAATAATCAGCGATCTGAAATTGaatcctctttctctctctttctctctgtcagtctgtctcccacataaacacacacacacacacacacacacacagatagacccTGAATTGTGCCTTTTATCTTTCCCGAAACACGAACAAGCTATCTTCACAAGCTTCAGCCAAGAGAAAGCCAGCACACACCAGTAACACAGAGAATACACTTCAAACCGCTTGCACACTGATAAGAACTGATGTTTCTTTAATTGCCTCAAAAAACAATGGCAAAGTTAATTACCTCGAAAAATGAGCCTGTTCCAACAGACAGGGATTGTATATGTGCCATGTCTCCCCCAAGACACACCAAAAGCTGTCTTTATAAAGTACGTCAAGTCGCATTATTTTAATTATCGCGTATCACTGTAATTCTGTTTGTGCTGGATTTTTCTCGTAACTCGGGTTATAAAGCATTGTATGCGGACTCATTATTGATTTCATTTGTTAGCTCATCATGGCAGCCATGTGACGTCTCAATTCCAGCTCCCATGATGATTTCAGACAATAGGCTCCCTTTTAATAGTTAATCACAGCTCTTTTCTAATTAGCAAAAGAATGTGCAGGAGATACAGTGAGCTTTGTTTTGGGCATAGCTGATCACTCCAGATCAGCCCCAGATGAGACGTTAGATTAAGAGAGCTTATCGCGAGTTGCTTTGGTTGCGCCTGTTAAACGGATGCTCTGGTTTTCATTTTCGAGAGCTGGTAAAGTGAGCAAGCCCCTTCGCATTATTCACCCGGGCCGGCTGATCGAAGCCCGGCTCAATAGCACTAAACCAGCTCATGCTCCGAAGATTTGTCTTACAAAACCTTGAAAACTGCTCTGAACGTCCATACATTGATTTTTGTTGGCAGGGATCTCCAGGGCTTTCATGTAGAGGCAGGCTCCATGCAGAGGTGAGGAGAGGGCTTCCCCCATCAGAGTGGATGCTGGGAAAATTGAGTCAGGGGTTCCCTTTCCAGTGAAGCCCTGACAAAAGAATTAAAAACGTGTGAAGCCACTGAAGCCTGGCCATGTCTTCGATTACAGATGCCTAATGTCCTGGGCTTGCTGTTAGGACACAGAAAATTCGTGCTACATTCTCCGATACCTATGCATCATCTTCTATCGGCTCATCACAAACACCTTTTCTGCTTTATGCATGCTCCACTTCACTGCTTATTAAAACCTAGAGGCGGTTAAGTTCCCTGCTTCAGCTTTGCTATTTTCCCAACAAAACTAATTAATTCAGAAACGTGAAGCAATTGCGTTTGAAATCGAGCTTCTCCCTCGTCTAAGTGCCGCAGTCTGTAGCAGACGGTGTAATTGCAGGCGCAGGTAGTGATGAACATTAATGAACGCCTTACACACTCAGAGGCAGCTGCGTTTTATGTGCCTCTTGGATCGCTGATGAAATTTTTAAAGCAGCCACCAGCATGAAAAACTCATCACTACTATATCAGCATCTGGACAGATGCATGACACACTCCTCTTCCCATTTTATCCCTTTGAAGTCCTCAGGAATTTTAAAATCTAAGTGAAGCCTAATTACATATCTTGGGACTGGCTGGATTTAAGTGTTCGTATTGTTAGGTGGGCTGAGGGAGGGAGTGtgtagagagagtgtgtatgtgtgtgtgtgtgtgagagagagagagagagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU396029 True 2651 lncRNA 0.43 2 18761089 18854003

Neighbor

gene id symbol gene type direction distance location
hnf4g hnf4g,LOC107586790,LOC107666612 coding upstream 218329 18530475 ~ 18542760 (+)
LOC113541230 NA coding upstream 233394 18523154 ~ 18527695 (+)
pign pign,LOC107663715,LOC107721925,LOC107666639,LOC107705240 coding upstream 237795 18503818 ~ 18523294 (+)
sgk3 sgk3,LOC107721888,LOC107663688,LOC107666631,LOC107705243,LOC107590197 coding upstream 293844 18453107 ~ 18467245 (+)
rrs1 rrs1,LOC107590198,LOC107721889 coding upstream 337529 18420986 ~ 18423560 (+)
zc2hc1a zc2hc1a coding downstream 167003 19021006 ~ 19033661 (+)
ctnnd2a ctnnd2a,LOC108256437,LOC108438556,LOC107716425 coding downstream 206886 19060889 ~ 19328125 (+)
LOC117595764 NA coding downstream 478171 19332174 ~ 19335280 (+)
LOC117595802 NA coding downstream 481023 19335026 ~ 19336650 (+)
ndufb4 ndufb4 coding downstream 537970 19391973 ~ 19395890 (+)
G334345 NA non-coding upstream 22911 18678875 ~ 18738178 (+)
G334371 NA non-coding upstream 34359 18688759 ~ 18726730 (+)
LOC117595807 NA non-coding upstream 54996 18705292 ~ 18706093 (+)
LOC113541128 NA non-coding upstream 79266 18543362 ~ 18681823 (+)
G334219 NA non-coding upstream 230182 18500783 ~ 18530907 (+)
G334573 NA non-coding downstream 78499 18932502 ~ 18932710 (+)
G334575 NA non-coding downstream 79046 18933049 ~ 18933251 (+)
G334733 NA non-coding downstream 491886 19345889 ~ 19351752 (+)
LOC117595782 NA non-coding downstream 667362 19521365 ~ 19522260 (+)
G334806 NA non-coding downstream 707099 19561102 ~ 19589060 (+)
LOC117595806 zfhx4,LOC107590192 other upstream 13612 18712048 ~ 18747477 (+)
G334373 NA other upstream 43136 18693149 ~ 18717953 (+)
mcmdc2 mcmdc2 other upstream 275080 18467878 ~ 18486009 (+)
mtfr1 mtfr1 other upstream 437794 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 768075 17986762 ~ 17993014 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 463854 19317857 ~ 19427936 (+)
G334838 NA other downstream 722108 19576111 ~ 19577073 (+)
cip2a kiaa1524 other downstream 782865 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other downstream 824478 19678481 ~ 19683870 (+)
G335231 NA other downstream 934580 19788583 ~ 19789058 (+)

Expression


Co-expression Network