G334471


Basic Information

Item Value
gene id G334471
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18755870 ~ 18759552 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU396116
AACGCCTACCCAGGATTCTTTAGTGAGGGGGGGGTGGCTATCTAGCACAAAGCAGGACCCAACCAGCTCAAGTTCCCCACTTTTTAAAGTTCTTTAAAGGCTCCATGTGTCATTTAGTTGAGGGCATGGTCTGCACTCATGaacaatgcattaaaaatactCCAACGAATGGTGTTGTGTAAAAAACACTCCATTGTCCATTAAAATTAAACCTACACCAGGCGTTGAAAGCTTGTTGCAACACACTGTGATATAGTAACACAACCAATAGGAGATGGTTTGGAGTGAGGCTTCAGTCCTTTACGTCTAGGTTTAGCAAGACAGAGGAGAATATAACTATAAAAGCTGTAATGTTACAATCCAACTCTCCAAAtctgcactcttagaaaaatggGCTCTTCAAGagttctcaaacattttggaAAAGCAAAACCACAGACCCTTCATTAgacatttattgtttaaaaaagatttGACACATTAATTAACCATGTACAAAACTATCTTGGCTATTTATGCAAGCCAGAGAGTTTCTGAACTTTCTGCTCaaaaaactcatttttattaacatttttaatcagattcaggttgacattatttataaaaatgataaatttgATAATAGATAGGTTGTAGttttcaccactgtaacaaaattagaaACTTGTAGACTCCTTGGCTGTGCTTCACAGACCTCGCTTTGAGAATGTTGGCTTTAAGGGTTCATttgataattaagggttcttatctTGAAAAACGGTTCTACTCAGAACCTCTTCTCAGGCATACACTCCGTTTTAGGACTCTGTTGTAGAAGGAAAACCGAGGAATCCTTAAGGGTTCTCAATTTTCTAATTATGCTTAGGACACTGCAAAATTTCACTAAAATAGATGCTAGCCTGAAAACAGTGCTGTAGCTCTACTCTTTCATTCAGTATAACAGAAAAAAGCATTGAtctatagtaataaaaaaaaaaaaaattctgacagATACCAAAAATGTCCTTGTAAAAGCATTGTTCATAATAGGTGCTTTAGCGCATTAAACTCCTAGAAGAttttctattagtttcactgtagttactgaataacatgctttaagatgaataactgaatactAAGCCGAGAGTTTAAGAAGTTAAATATGCAGGTTGAGAGGGTCTGAATAAAACAGCAGTGTGTTGCTACACTTTGTAAAGGGAGTAGATTATTAATAGTGGGCAGGTCATGCCctaaaataagtaataattcTTTGTTATTGGCTTGGAGTAGGCTACCCTCAAGTGCAAAgcgttttgtttttcttctttaaaggATAAGAAAGCTAAAACACATATTATGGCAGTGTTTCTAACCTCGCTTTTATTCATAAATGAATGCTGGAGACCTGGAGGGAACCCTTGTTTCAGGTATGCTTGGTTAAGATCTCGAGGGCTAAAGTGGGTCTCgggaaataaagacagaaacgAGCTCTTGATCGTGCCGTAATGCTGCTGCTGCGTGTGTGTTGAGAGTGTTTCTTTACACTATACATTATGCAAATTCCTCCTGCACACCTAGACACAGCAGGATAATAATCAGCAACCCCATTCACTAATCACAGAGTTTAACACGGCACGTTGTCAGCTCTCCCAAGTGTCtcccatgtgtatgtgtgagacaCGCTTAATTCAGATCAGACGTAATAACAGACTGAAGTAAAACCACTCCTGCCCAGATGGAGCCTTGTAGAGGATGCAGACACACATGCATCTCCTTCATACAAGCAGATTAAATGAAAAttcagcattattattattgagcaGAAAAGGCCTCACTCTGGTTATAATTTTAACACTAGCAGTCCCTACTGTACTCCCAGCTAATCGTGTGTCTTTAACGCAGTCCAAGATGATGGAATCATGCAGGAATCATCAGCTACTGCTCCGGGAACTCTCTGATAGCACCAGGCCTCCTTGATCGCACTCgccttttatttaaaacagcaCCAATCCTGCGGACCAACTTCttttcatttacatacattagCGGAGTTCAAACGCGCCACTAGCCATGAGCTAGTTCCCCACATAACTTCTGAATCCGTCTGCTTAATGGCTCCCCACAATGCAAGCAACttggaaaaagacaaaaaggggAGGGGTAATTTCActattctctttttttaatccatttaattgattatatttatccatttattaggAACTGGAAAGTGGCTAGCATTAGCTGCTGTTCATTTCAATGGGGGGGTTTCCTCACTCATGACTAGCCCATGAGGAAGCACAGGTACTGGACGGTGTCACCTTTGGTTCATGGGAACATAATTTGAGCATGTGACTGTTTACTACGCAAATAGTAACTTTAAATTGTGATGTGAAAACTGCATTGTGATGTTTAAGTTCCCCTAAAAAATCAAACGATCACTAGAAAAACATCTactgtaacagaacaaacacacagaaacctcAACGTTGCGTGGAAATAATATGAGGAATGAGGAAACATGTTGGATTTTAAGATAATGGATTTTATACCACTTTAAACAGATGCACTAAGTGAACACGGAGACTGTATTAAGTTGAAATTCCCAGCTGTATTAACTCTGAACCCGGGTTAAGCTGCAAAGCTCCGAATGGTTAGTGACAATAAGGCAAGGCTAGGGGTAATCAATACCAGCTATCAATCCTACACTTTGTTCTGATGGATGAGGACAAGAGCAGGCTGAGGATAAGCGAAAATGAGAAGCATAGCCCGTGCCAAAACGacaagaaatgaaagaaatctGTTTGTCAAAAAGCACTGAATTGGTGCAGGCAATTTAACCTGGTACATttgcagagaaaataaataagcaggtaaataaatatataatgcttCCTGAGGCCCCGTGCATCGAGTGCAAGGTCAGTGGAGTGAACACTGGTGcaaaggagggagggagggaaggaggaagAAAGAATGGTGTGATGGCCGGAGTCAGGACTAATTACTCGCAGGCACAGCAGTGGAAGAGGGGGTCACTAACTTTAGCCTGACACCTGAACGCCACAGCCATCAGCGGCCCCCGAGCCTAATCGCGAGTGATAGGACTTGGGCTCTGCGCTCTGGGAGAGATGATAGCTAATGACAGGGGTGTtggatacacacacatcacgcTACCAGTCAGCAGTGTCCAAGCGGAAATCCGTCCATATCATCACACGTTCATATTAACACCACTTCAGACTTGTAGCGCTTTATGCAATCGCTTAATTGTCGCTCTGTGTTGCCTGTCTTTGTGTTCGACGCACTTTGACAATGGCTTGTCTCTTTTAATGCCTTCTGACAGTTAGCATTGTACTATCTGCTGCGGTTAGTGTCAGTGGTGGCGCTGCACAATTAAAATGCCGCGACGCAACTGGCTTGTCTGAATTAAGTCCAGATCAGTGCTGCTGCTATTGCTAATTCCTCAACTCTTAACACTCGACCCACTTTGAATCATCACTATTAGCACTTACACCTTCCCCGGTCATGTGATCTGTGCTTTAAACCATCTATCCTCCTTTTGTCACCAGCCCACTATTCACGCACTAAGCTCAGCTTATTGTTATTGTTCGCCCCAGAACAAAAAAAGgatatgcctttttttttaaatatgcgtAAATAGAGGCTGCCATTGCACTGCAGCTGCAGTCGCTTCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU396116 True 3683 lncRNA 0.41 1 18755870 18759552

Neighbor

gene id symbol gene type direction distance location
cops5 cops5,LOC107590195,LOC107705241,LOC107663714 coding downstream 253788 18496163 ~ 18502082 (-)
ppp1r42 ppp1r42 coding downstream 265289 18483387 ~ 18490581 (-)
LOC113541285 tcf24 coding downstream 273470 18479679 ~ 18482400 (-)
crhb LOC108256093 coding downstream 362892 18391371 ~ 18392978 (-)
trnay-gua_4 NA coding downstream 376136 18379649 ~ 18379734 (-)
pex2 pex2 coding upstream 49042 18808594 ~ 18816074 (-)
ankrd33ba LOC108256627 coding upstream 603847 19363399 ~ 19377873 (-)
ropn1l ropn1l coding upstream 622936 19382488 ~ 19391533 (-)
hgd hgd,LOC107705246,LOC107721894 coding upstream 636347 19395899 ~ 19411215 (-)
pola1 pola1,LOC107705179,LOC107666635,LOC107721886,LOC107663691 coding upstream 680211 19439763 ~ 19489383 (-)
G334470 zfhx4 non-coding downstream 5957 18749395 ~ 18749913 (-)
G334427 NA non-coding downstream 170635 18584763 ~ 18585235 (-)
G334426 NA non-coding downstream 171558 18583602 ~ 18584312 (-)
G334425 NA non-coding downstream 172845 18582473 ~ 18583025 (-)
LOC113541286 NA non-coding downstream 277077 18474666 ~ 18478793 (-)
G334467 zfhx4 non-coding upstream 25940 18785492 ~ 18789747 (-)
G334570 NA non-coding upstream 170427 18929979 ~ 18930439 (-)
G334574 NA non-coding upstream 173077 18932629 ~ 18932840 (-)
G334602 NA non-coding upstream 201295 18960847 ~ 18961053 (-)
LOC117595792 NA non-coding upstream 310786 19070338 ~ 19075266 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other downstream 235665 18437514 ~ 18520205 (-)
zmp:0000000991 NA other downstream 824056 17916084 ~ 17931814 (-)
c22h11orf65 c23h11orf65 other downstream 839314 17909324 ~ 17916556 (-)
LOC113541127 LOC108256571 other downstream 847058 17907584 ~ 17908812 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 1516754 17185524 ~ 17239116 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 245946 19005498 ~ 19015855 (-)
pdk3a pdk3,pdk3a,LOC107586717,LOC107705263,LOC107656160,LOC107663620,LOC107590342,LOC107721912 other upstream 747536 19507088 ~ 19521331 (-)
nup58 nup58,LOC107721897,LOC107590217 other upstream 795589 19555141 ~ 19579031 (-)
G335165 amer2 other upstream 841175 19600727 ~ 19603693 (-)
cnksr2a cnksr2,cnksr2a other upstream 1129487 19889039 ~ 19967804 (-)

Expression


Co-expression Network