G334573


Basic Information

Item Value
gene id G334573
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18932502 ~ 18932710 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU396219
CTGGGAAATTAACAAACCTAAATATAATGAAACATAtcatttattatagaaatgtcTAGGAGAATCACAATTTGTTCCCTGTTTTATCTAAGTGAGCTGTAATGTACCACATCCTCCCGGGATACCAGGAATACTAAACATGGACATGTGGGTGAGGCTAGGAATACCGCAGACATTTAGTTGATCAAATGCAATCATCTCAGTTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU396219 True 209 lncRNA 0.37 1 18932502 18932710

Neighbor

gene id symbol gene type direction distance location
LOC113541280 LOC108256606 coding upstream 1230 18816234 ~ 18931272 (+)
zfhx4 zfhx4,LOC107666618,LOC107721891,LOC107705239,LOC107590192 coding upstream 143917 18732960 ~ 18788585 (+)
hnf4g hnf4g,LOC107586790,LOC107666612 coding upstream 389742 18530475 ~ 18542760 (+)
LOC113541230 NA coding upstream 404807 18523154 ~ 18527695 (+)
pign pign,LOC107663715,LOC107721925,LOC107666639,LOC107705240 coding upstream 409208 18503818 ~ 18523294 (+)
zc2hc1a zc2hc1a coding downstream 88296 19021006 ~ 19033661 (+)
ctnnd2a ctnnd2a,LOC108256437,LOC108438556,LOC107716425 coding downstream 128179 19060889 ~ 19328125 (+)
LOC117595764 NA coding downstream 399464 19332174 ~ 19335280 (+)
LOC117595802 NA coding downstream 402316 19335026 ~ 19336650 (+)
ndufb4 ndufb4 coding downstream 459263 19391973 ~ 19395890 (+)
G334386 NA non-coding upstream 78499 18761089 ~ 18854003 (+)
G334345 NA non-coding upstream 194324 18678875 ~ 18738178 (+)
G334371 NA non-coding upstream 205772 18688759 ~ 18726730 (+)
LOC117595807 NA non-coding upstream 226409 18705292 ~ 18706093 (+)
LOC113541128 NA non-coding upstream 250679 18543362 ~ 18681823 (+)
G334575 NA non-coding downstream 339 18933049 ~ 18933251 (+)
G334733 NA non-coding downstream 413179 19345889 ~ 19351752 (+)
LOC117595782 NA non-coding downstream 588655 19521365 ~ 19522260 (+)
G334806 NA non-coding downstream 628392 19561102 ~ 19589060 (+)
G334888 NA non-coding downstream 771975 19704685 ~ 19707006 (+)
LOC117595806 zfhx4,LOC107590192 other upstream 185025 18712048 ~ 18747477 (+)
G334373 NA other upstream 214549 18693149 ~ 18717953 (+)
mcmdc2 mcmdc2 other upstream 446493 18467878 ~ 18486009 (+)
mtfr1 mtfr1 other upstream 609207 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 939488 17986762 ~ 17993014 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 385147 19317857 ~ 19427936 (+)
G334838 NA other downstream 643401 19576111 ~ 19577073 (+)
cip2a kiaa1524 other downstream 704158 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other downstream 745771 19678481 ~ 19683870 (+)
G335231 NA other downstream 855873 19788583 ~ 19789058 (+)

Expression


Co-expression Network