G334733


Basic Information

Item Value
gene id G334733
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19345889 ~ 19351752 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU396406
CTGCTCAAAAATGTGTCAGGCAAGGATGAACACATCAGACGTGTCAGCTAGGAGGCTGATACATGGTGTATTTGTCAGCGCTAGTCAtgtagcatttttgttttactccCGGGCAACATGCCAGTGTACACTTTATATACTGGACcatctgcatacacacacacacacacacacacgtgcgcgcgCATCATCTTCTGTCTCCGGAACGAGCTCATACCCAGTGTGAGAACAGCGAGCAGGTGGAAAAATTGCGCGTTTGTCGCAGCAAGTGGAGCGAGATGGCCTGGAGAGAACCTGCCACATGCAATCTGGCTTcttcagacagacagcaggGTGAAGCTTAATCGCTCCAAAGCGCTGATGTGAAGTGCCACACACCTGCTGAGCAGGGAACGCCCTCTCCCCGGTACCTGAGACGCTCCTGCGGGTCAGGCTCGAGAGGAACCACCGTTTAACCGAGAGTGATTTGTTCGAGGCTTCACACTGAGCCGAAACAGCCAGACGTATTTAATCGGGTTTCAGGGGTCACTGACTTCTCTACAGACGTCCCTGTGAAGTTCTGCAGAACATTTCTCCTCGTTTTTGGTCCTCTGTCTCAGATCAGAAGGAAGGACGACCAGCTATTGGCTGGAAGGAATCTGGAGCTTATGGTCATGtttaggtttgtttttttatcacGTGAGCTTGGATTCTGCATCCAAGCACAAAATTATGCTCTAATAATATAGATAATAATAGAGTAaatgctatagaaataaaacagtaaataactgcataaatactTCTGCTGAAAAATGAATGCTTAATACAAGAACTGGAATGGAAATCAGAATGAACATTAAAAACTATgacagtagtaataataataataataacaataataaactaaaataagaCATCAAATAAAAATTCTGAGGCCATATTGTTTCAgagtctgtgtttttgtttgtttgtttgtttgtttgttttatctcaAGTAATGATTTTGGTCATTGTTTTAGCTCGGTTTTACATGTgtatgtctctgtctgtctgtcagcctGATTGTTaatttatctctctgtctgttaatctatatgtttgtctgtttatctgtcatttatctgtctatctatctgtcgatctgtcagtgtgtctgtctgttaatctgtctgtctgtctgattagctgtctctctgtctatcttcaTGTCTTCGTGCCTAACCTGTGATAAAGGAGGCATTACCGCAACCTCTTGTTGATAGTAGCAGTCAGAGGCGTGatgttgatttttattaaatgagtCATTCGAGCATGTCCTGCTCCGTGTGTGAATTAAACACTGAAGAGCGAGTGTAATGAGGTTCGGAGGAGAGGAACGTTCACTGACAGTTCGATGATCGTTATTTTCATGCTAGTTTCCTCGTGGGGAGAGGAGCGTGCCCGAATACTCGTGTGTCGGTTCTGTTGATAGTTGACAATGGAACGATGCGAGTATCTTTCTCATTACTGcagcaagagtgtgtgtgtagtgtgcagtgtgtactgtgtagtgtatagtgtgtagtgtgcagtgtgtagtgtataccatgcagtgtatagtgtaccATGTGCAGTTTGTAGCGTGTAGtaaatagtgtacagtgtatagtgtgcagtatgtaatgtgtaatgtacagtgtatagtgtgcagtgtacagtgtatagtatGCAATGTATAGTATGcagtatgtaatgtgtaatgtacagtgtgcagtgtacagtgtatagtatgtaatgtgtagtgtgtagtgtacagtgtgtagtgtatattatgcagtatataaagtgtagtgtgtagtgtacagtgtgcagtgtatattatgcagtatatagtgtgtagtgtacagtgtgcagtgtatattatgcagtatatagtgtgtagtgtgtagtgtacagtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU396406 True 1921 lncRNA 0.42 2 19345889 19351752

Neighbor

gene id symbol gene type direction distance location
LOC117595802 NA coding upstream 9239 19335026 ~ 19336650 (+)
LOC117595764 NA coding upstream 10609 19332174 ~ 19335280 (+)
ctnnd2a ctnnd2a,LOC108256437,LOC108438556,LOC107716425 coding upstream 17764 19060889 ~ 19328125 (+)
zc2hc1a zc2hc1a coding upstream 312228 19021006 ~ 19033661 (+)
LOC113541280 LOC108256606 coding upstream 414617 18816234 ~ 18931272 (+)
ndufb4 ndufb4 coding downstream 40221 19391973 ~ 19395890 (+)
arxa arx,arxa,LOC107586699,LOC107663641 coding downstream 78016 19429768 ~ 19436760 (+)
pcyt1ba pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205 coding downstream 146550 19498302 ~ 19506536 (+)
mtmr6 mtmr6,LOC107721921,LOC107705267,LOC107590218 coding downstream 227558 19579310 ~ 19593452 (+)
amer2 amer2 coding downstream 248813 19600565 ~ 19603770 (+)
G334575 NA non-coding upstream 412638 18933049 ~ 18933251 (+)
G334573 NA non-coding upstream 413179 18932502 ~ 18932710 (+)
G334386 NA non-coding upstream 491886 18761089 ~ 18854003 (+)
G334345 NA non-coding upstream 607711 18678875 ~ 18738178 (+)
LOC117595782 NA non-coding downstream 169613 19521365 ~ 19522260 (+)
G334806 NA non-coding downstream 209350 19561102 ~ 19589060 (+)
G334888 NA non-coding downstream 352933 19704685 ~ 19707006 (+)
G335214 NA non-coding downstream 414718 19766470 ~ 19766826 (+)
G335215 NA non-coding downstream 415711 19767463 ~ 19768343 (+)
LOC117595806 zfhx4,LOC107590192 other upstream 598412 18712048 ~ 18747477 (+)
G334373 NA other upstream 627936 18693149 ~ 18717953 (+)
mcmdc2 mcmdc2 other upstream 859880 18467878 ~ 18486009 (+)
mtfr1 mtfr1 other upstream 1022594 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 1352875 17986762 ~ 17993014 (+)
G334838 NA other downstream 224359 19576111 ~ 19577073 (+)
cip2a kiaa1524 other downstream 285116 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other downstream 326729 19678481 ~ 19683870 (+)
G335231 NA other downstream 436831 19788583 ~ 19789058 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other downstream 518629 19870381 ~ 19882836 (+)

Expression


Co-expression Network