G334838


Basic Information

Item Value
gene id G334838
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19576111 ~ 19577073 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU396524
TGTTGAGCCCGAGCTGGAGAAGAGCGAGGAGCCGAGGCTGAGCCCGGTGGCTGGAGCCGAGGAAGCGGCTCCTCCTCCCAGGTTGAGCGAGAACCCTGTGGATGATCCGCTCTGAGGCGCTGACGAGGTGATGACGGAGCCCAGAGACAGACCGGTGGCTGCCGGGGCCgaggtggtgctggtggtgctCAGAGAAAACGGACTCGCCGAAGCCGCCGGTTTTCCGAAACCGAAGCCGAAGCCTGTGgaggcggcggcggcggcggcagTGGAGGCGGCGGCGGTGGGAGCTCCTAAGGTGAGGCCGGTCGACGGTGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU396524 True 320 TUCP 0.68 2 19576111 19577073

Neighbor

gene id symbol gene type direction distance location
pcyt1ba pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205 coding upstream 69575 19498302 ~ 19506536 (+)
arxa arx,arxa,LOC107586699,LOC107663641 coding upstream 139351 19429768 ~ 19436760 (+)
ndufb4 ndufb4 coding upstream 180221 19391973 ~ 19395890 (+)
LOC117595802 NA coding upstream 239461 19335026 ~ 19336650 (+)
LOC117595764 NA coding upstream 240831 19332174 ~ 19335280 (+)
mtmr6 mtmr6,LOC107721921,LOC107705267,LOC107590218 coding downstream 2237 19579310 ~ 19593452 (+)
amer2 amer2 coding downstream 23492 19600565 ~ 19603770 (+)
LOC113541258 LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 coding downstream 162984 19740057 ~ 19750055 (+)
LOC113541169 klhl34 coding downstream 306974 19884047 ~ 19887557 (+)
sh3kbp1 sh3kbp1,LOC107590295 coding downstream 473663 20050736 ~ 20112391 (+)
LOC117595782 NA non-coding upstream 53851 19521365 ~ 19522260 (+)
G334733 NA non-coding upstream 224359 19345889 ~ 19351752 (+)
G334575 NA non-coding upstream 642860 18933049 ~ 18933251 (+)
G334573 NA non-coding upstream 643401 18932502 ~ 18932710 (+)
G334386 NA non-coding upstream 722108 18761089 ~ 18854003 (+)
G334888 NA non-coding downstream 127612 19704685 ~ 19707006 (+)
G335214 NA non-coding downstream 189397 19766470 ~ 19766826 (+)
G335215 NA non-coding downstream 190390 19767463 ~ 19768343 (+)
G335243 NA non-coding downstream 247630 19824703 ~ 19824911 (+)
G335345 NA non-coding downstream 388471 19965544 ~ 20029491 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other upstream 148175 19317857 ~ 19427936 (+)
LOC117595806 zfhx4,LOC107590192 other upstream 828634 18712048 ~ 18747477 (+)
G334373 NA other upstream 858158 18693149 ~ 18717953 (+)
mcmdc2 mcmdc2 other upstream 1090102 18467878 ~ 18486009 (+)
mtfr1 mtfr1 other upstream 1252816 18315354 ~ 18323295 (+)
cip2a kiaa1524 other downstream 59795 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other downstream 101408 19678481 ~ 19683870 (+)
G335231 NA other downstream 211510 19788583 ~ 19789058 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other downstream 293308 19870381 ~ 19882836 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other downstream 408259 19985332 ~ 19988036 (+)

Expression


Co-expression Network