G334888


Basic Information

Item Value
gene id G334888
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19704685 ~ 19707006 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU396588
TTGTTAATCTTCCAGTCGCAGTAGTTTCTCCATATGCAATTAAATTGATCCTCAATCCTTCATATTTTTACCTCAAGGCACTTTGTCATTTCAAGGATACAAAAGAATAACTGGAAACAGCgaaatgcattaaataacaTCAGGTTCtgttttctggccctgaaattagctccgccctcTTTCCCTACAAGGCCACTCTGAAAGACGTTTCAAAACAGACGCCAGATAAACAGCAGTAATGAACCAGATATTAGCACCAAGTATCACGTATAGATTAATCGCTAGTTTAATCTATAATTTACTTTCGTTATGTTGTCTGATATGTTGATAGTTGATTCATCTTTTAGGTATTAACTTTGTTAGCTTGCTAAGCTGATctaagctaatgttagcttgctaaaTTTTCAAACACAACTCATGTAGactgctgtgtctgtgtctctgcacAGATATTCAAGAGCTTTAAACTTTCACAGCTTCCCACAGCTCAGAGTGATCTCAGGAGACGATGGCTAGCAAACCTACGTCGCAAACTTTTCACCATTTCCACTCAGTGAAGGTCTGTTGCAGACACTTCACATCAGATCAGCTAGCTGAAACGAAACCTCTGAGGGTTAGAGAAGATCGGAAAAAAGTGCGGTGTCACTGCGGTGGCTCTTTGAACGGATTGACTACAGAATTCAAACACCACTCAGGCCCAGTGTGTCTGAGAGGATGAATCTAACAGACACACAACACTTGACCTTGAACCTTGAAGTAACATTgtaccttattattattattattattattattagcagtagtagtattaaatTACTAAGCATGTGTTTACATTAACAATAGCTACCTATATTTATTAGCGTATGGATTATTGttgtaaaaaaaacagacaatagaaacagaataacagacaaaagaaaatcacaataataatttaatgtatgtGTCTAGTAATTAATATCATTGGCGATATCCAGTTTCACCTGAAGACCCTCGTTAGCAACAGCACAAGCTACTTTGtaatgaactgtgtgtgtgtgttaacgtTAACTTGGATGTCCATCTCTGTTAGCAggtattactttttttttttaaaccaaatatgATTGTGCGAGCACCTGACTGCGGGCTACTTAAGGTCTACAGATGACTACAATCAGTTTAGAGCTGAACAACTGCTGTAGTcctaattattcatttttgtttgtttctattgCTTTTCAGCACaggtttttgattgtttttgaatattttccCCTTTTTTGCCCTTATACGTGGTTAACAGAGACATGAACATAAGAGACATAGAGACATGAACATAAAATATATCCTCTCCCTATTTTCatcaaagaaaatgtttaactATTAGCCTGAGCTTCCTTCATAAGCACCAatggaaaaaagacaaagtgcAATGTGGGAATTCTGACTTTGAGAATGTtaacttaataaaataatgaggtTGGTGTTTTCAGATTAGAGACCTGTGACCTCCTCATTCTGCTGGTTGGTTCAGGGAATCTTCttcatttgtctctctctgacttGTGTCCACTGAAGTGATCTCACCGTTGTTCCGCCGTATCCAGTATATTATGGCAGCTATGATACCGATGACAACGATGATGACACTAACAGCAataccaacaccaacaccaacgcCAACGCCAACATGGTGGTTAGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU396588 True 1686 lncRNA 0.38 2 19704685 19707006

Neighbor

gene id symbol gene type direction distance location
amer2 amer2 coding upstream 100915 19600565 ~ 19603770 (+)
mtmr6 mtmr6,LOC107721921,LOC107705267,LOC107590218 coding upstream 111233 19579310 ~ 19593452 (+)
pcyt1ba pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205 coding upstream 198149 19498302 ~ 19506536 (+)
arxa arx,arxa,LOC107586699,LOC107663641 coding upstream 267925 19429768 ~ 19436760 (+)
ndufb4 ndufb4 coding upstream 308795 19391973 ~ 19395890 (+)
LOC113541258 LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 coding downstream 33051 19740057 ~ 19750055 (+)
LOC113541169 klhl34 coding downstream 177041 19884047 ~ 19887557 (+)
sh3kbp1 sh3kbp1,LOC107590295 coding downstream 343730 20050736 ~ 20112391 (+)
map3k15 map3k15,LOC107685453 coding downstream 409008 20116014 ~ 20152049 (+)
LOC113541177 NA coding downstream 457761 20164767 ~ 20167147 (+)
G334806 NA non-coding upstream 115625 19561102 ~ 19589060 (+)
LOC117595782 NA non-coding upstream 182425 19521365 ~ 19522260 (+)
G334733 NA non-coding upstream 352933 19345889 ~ 19351752 (+)
G334575 NA non-coding upstream 771434 18933049 ~ 18933251 (+)
G334573 NA non-coding upstream 771975 18932502 ~ 18932710 (+)
G335214 NA non-coding downstream 59464 19766470 ~ 19766826 (+)
G335215 NA non-coding downstream 60457 19767463 ~ 19768343 (+)
G335243 NA non-coding downstream 117697 19824703 ~ 19824911 (+)
G335345 NA non-coding downstream 258538 19965544 ~ 20029491 (+)
G335377 NA non-coding downstream 351368 20058374 ~ 20058822 (+)
cip2a kiaa1524 other upstream 881 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other upstream 20815 19678481 ~ 19683870 (+)
G334838 NA other upstream 127612 19576111 ~ 19577073 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other upstream 276749 19317857 ~ 19427936 (+)
LOC117595806 zfhx4,LOC107590192 other upstream 957208 18712048 ~ 18747477 (+)
G335231 NA other downstream 81577 19788583 ~ 19789058 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other downstream 163375 19870381 ~ 19882836 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other downstream 278326 19985332 ~ 19988036 (+)
ccl20b NA other downstream 453261 20160267 ~ 20163106 (+)
mynn mynn other downstream 554862 20261868 ~ 20270565 (+)

Expression


Co-expression Network