G335099


Basic Information

Item Value
gene id G335099
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19317859 ~ 19360738 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU396808
ATGATTTTATATTAACTCTTTATTCAGACAGCCACACCTAATTTCTAACATCATATCATCCACTTACACAAACCGATTTATACACTTTACATCATTCCAGGAGTAATTGGTCtaaaagagaaacagataaaaataaaactcgATTAACCTTTCATTCAGTACAGCTATAGAATGAACTCGGATTCTGATCTGTGTTCAGTGACAGAGCTCTCAGATTTAGTGTAGAAGATTTTTAAAGGGAACGAGAGAACAGAACCGGgtagagttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagaaagagagaaagagagagagagagagagagagagagagagagagagagagagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU396808 True 372 lncRNA 0.38 2 19317859 19360738

Neighbor

gene id symbol gene type direction distance location
pex2 pex2 coding downstream 501785 18808594 ~ 18816074 (-)
cops5 cops5,LOC107590195,LOC107705241,LOC107663714 coding downstream 815777 18496163 ~ 18502082 (-)
ppp1r42 ppp1r42 coding downstream 827278 18483387 ~ 18490581 (-)
LOC113541285 tcf24 coding downstream 835459 18479679 ~ 18482400 (-)
crhb LOC108256093 coding downstream 924881 18391371 ~ 18392978 (-)
ankrd33ba LOC108256627 coding upstream 2661 19363399 ~ 19377873 (-)
ropn1l ropn1l coding upstream 21750 19382488 ~ 19391533 (-)
hgd hgd,LOC107705246,LOC107721894 coding upstream 35161 19395899 ~ 19411215 (-)
pola1 pola1,LOC107705179,LOC107666635,LOC107721886,LOC107663691 coding upstream 79025 19439763 ~ 19489383 (-)
LOC113541094 pola1 coding upstream 128580 19489318 ~ 19496957 (-)
LOC117595792 NA non-coding downstream 242593 19070338 ~ 19075266 (-)
G334602 NA non-coding downstream 356806 18960847 ~ 18961053 (-)
G334574 NA non-coding downstream 385019 18932629 ~ 18932840 (-)
G334570 NA non-coding downstream 387420 18929979 ~ 18930439 (-)
G334467 zfhx4 non-coding downstream 528112 18785492 ~ 18789747 (-)
G335105 NA non-coding upstream 31226 19391964 ~ 19428258 (-)
LOC117595800 NA non-coding upstream 53490 19414228 ~ 19416072 (-)
G335149 NA non-coding upstream 190302 19551040 ~ 19551530 (-)
G335150 NA non-coding upstream 200240 19560978 ~ 19564462 (-)
G335230 NA non-coding upstream 412115 19772853 ~ 19773057 (-)
pkia pkia,LOC107666628,LOC107705234 other downstream 302004 19005498 ~ 19015855 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other downstream 797654 18437514 ~ 18520205 (-)
zmp:0000000991 NA other downstream 1386045 17916084 ~ 17931814 (-)
c22h11orf65 c23h11orf65 other downstream 1401303 17909324 ~ 17916556 (-)
LOC113541127 LOC108256571 other downstream 1409047 17907584 ~ 17908812 (-)
pdk3a pdk3,pdk3a,LOC107586717,LOC107705263,LOC107656160,LOC107663620,LOC107590342,LOC107721912 other upstream 146350 19507088 ~ 19521331 (-)
nup58 nup58,LOC107721897,LOC107590217 other upstream 194403 19555141 ~ 19579031 (-)
G335165 amer2 other upstream 239989 19600727 ~ 19603693 (-)
cnksr2a cnksr2,cnksr2a other upstream 528301 19889039 ~ 19967804 (-)
G335523 NA other upstream 818674 20179412 ~ 20182412 (-)

Expression


Co-expression Network