G335103


Basic Information

Item Value
gene id G335103
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19359557 ~ 19404889 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU396812
gagagagaaaaaacgggTTCTGAGGATGTTGGTCAAGGCAGAACACTGGCAGGCACAGACAGAAAGGGACTGTGAGGAATGCTGGGAATCCCCCTGATGAACCTGAGCACTGACTTGGGAATTGGTTAGGAGCTGGTTTTGAATAAGTTGGGAATTGGTTGGTAATTGGGTGCAAACTGAGCGGCAATCATTTGGGAGCTGGTTGAAAACACGGGGGAAATTGGTTGGAAACTGTTTAGAAAGCAGCTGGGAATCATCTGGGAACAGGTTGGGAAATGACGGGCAATCAGTTGGGACCTGGCTGGAATTTGGTTGGAAATCTGATAGAAATCAATTGAGAACTGGTTGGAGACTGGTCGGGAATTAGCTAGGAAAAGGCTGGGAAATAGTTGGAAATTGGTTGGGAATCAGTTGCGAGTCAGTTAGGGATTGGCTGGGAATTGGTTGGGAATCGGATGGGGAATGGGCTGGATATCAGTCGGGAACTTGTTGAAAATTGACTGGGAATCGGCAGAAAACTGAGAAAATTAGTTGGGAGTCGATTAGAGACTGATTGAGAATCAGAAGGGAATCGAATGAAAAGTGGTTGGGGTTTGTTTTGGGATTGGTTGGGAGTGGGCTAGGAATGTGTGAGGAATAGACTGAGAATCGGTTGGGGGTTGTGGTGTGGTCCTTGTGCACTGGAAGAAGGTGGAGGTTCACTTGCGGGGCTGGTGGATGTGCTGGTTGATGTGGTGGGACGGCGGCAGCTTCTGCACCGAGGGTACAGGCTTCGTGTGAGCCACCTGAGCCGCGGCCGGGGTGAAGTCCTTATCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU396812 True 818 lncRNA 0.50 2 19359557 19404889

Neighbor

gene id symbol gene type direction distance location
pex2 pex2 coding downstream 543483 18808594 ~ 18816074 (-)
cops5 cops5,LOC107590195,LOC107705241,LOC107663714 coding downstream 857475 18496163 ~ 18502082 (-)
ppp1r42 ppp1r42 coding downstream 868976 18483387 ~ 18490581 (-)
LOC113541285 tcf24 coding downstream 877157 18479679 ~ 18482400 (-)
crhb LOC108256093 coding downstream 966579 18391371 ~ 18392978 (-)
pola1 pola1,LOC107705179,LOC107666635,LOC107721886,LOC107663691 coding upstream 34874 19439763 ~ 19489383 (-)
LOC113541094 pola1 coding upstream 84429 19489318 ~ 19496957 (-)
slc51a LOC108256565 coding upstream 117726 19522615 ~ 19531363 (-)
zdhhc20b LOC108438268,LOC108256609,LOC107705266,LOC107586722,LOC107590215,LOC107663708 coding upstream 135894 19540783 ~ 19554793 (-)
phldb2b LOC108256156,LOC108438454,LOC107586724,LOC107721837 coding upstream 204148 19609037 ~ 19663355 (-)
LOC117595792 NA non-coding downstream 284291 19070338 ~ 19075266 (-)
G334602 NA non-coding downstream 398504 18960847 ~ 18961053 (-)
G334574 NA non-coding downstream 426717 18932629 ~ 18932840 (-)
G334570 NA non-coding downstream 429118 18929979 ~ 18930439 (-)
G334467 zfhx4 non-coding downstream 569810 18785492 ~ 18789747 (-)
LOC117595800 NA non-coding upstream 9339 19414228 ~ 19416072 (-)
G335149 NA non-coding upstream 146151 19551040 ~ 19551530 (-)
G335150 NA non-coding upstream 156089 19560978 ~ 19564462 (-)
G335230 NA non-coding upstream 367964 19772853 ~ 19773057 (-)
G335232 NA non-coding upstream 383694 19788583 ~ 19789058 (-)
pkia pkia,LOC107666628,LOC107705234 other downstream 343702 19005498 ~ 19015855 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other downstream 839352 18437514 ~ 18520205 (-)
zmp:0000000991 NA other downstream 1427743 17916084 ~ 17931814 (-)
c22h11orf65 c23h11orf65 other downstream 1443001 17909324 ~ 17916556 (-)
LOC113541127 LOC108256571 other downstream 1450745 17907584 ~ 17908812 (-)
pdk3a pdk3,pdk3a,LOC107586717,LOC107705263,LOC107656160,LOC107663620,LOC107590342,LOC107721912 other upstream 102199 19507088 ~ 19521331 (-)
nup58 nup58,LOC107721897,LOC107590217 other upstream 150252 19555141 ~ 19579031 (-)
G335165 amer2 other upstream 195838 19600727 ~ 19603693 (-)
cnksr2a cnksr2,cnksr2a other upstream 484150 19889039 ~ 19967804 (-)
G335523 NA other upstream 774523 20179412 ~ 20182412 (-)

Expression


Co-expression Network