G335150


Basic Information

Item Value
gene id G335150
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19560978 ~ 19564462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU396860
GCGTTTCCTATTACAGCTAGCGTTTGAATTTTAGAAACCTCTTAAACTTACCGAAAGGTCTGTTTCGagattagtaaatatttttgaatgtatgGTGAGGGTTTATGATTTGAGGCCccgatcatgacaacaatcacaacgacagcagaaagttttgaagagggagagagagagagagatcatcagGCTGTTTAACgtcgctgtgcatgaaatcgataaacattacagtttgacttggaaaccagGCTCTCTAGTGGACCTCGCTTATTATCCTGTGGATGTACGAAAAATGACGCTCATGTAGCCGCTGCTGGTGAAAGTGAAGTACATTTGCACCCTCGGATGTTACCAGATTTAACTTGTCCCTGTAATAGAGAGCATGTGGATGGCAGACCTGAGCGCGCAAAGCATTAAAAAGGAGCGAAAGATTCCTTGAATTGTACGTCGACTCACAAAAGGAACcagagtgctcagtgctcgctgaactgaACTGCTCTCTCGTACATGTGACTGTTTCTCTGTATGCTTCAACGACGACACAAAGGCAATAAATCGAAATTTGAAGATactactgaatctgctacagttCGATTCGCGTTAGTATCCTCCAATCCGTATGTAACCTGCTTTGTTCGGGATCTGGAAAACCGCAAATTCCTGAATGATGACAAcgtagagaaggactatttcataagtattttaaaaagcaaatcaaATTTGTGATTGATGCGTTGATTTATTTCACTCGTTGtattttaaattgatttgtCGATCCGGATCGTTACAGCTCTGTTCTCTGTTAAACGTCCAGTAATGTTGGAAAATCCCGTAGTTCCTCCTCATGGTATTTTCACAGAGCTACAACTCTGCTTTGCTTTAATTGATCATtaatcatggaaaaaaaaaattgccataaTTCCATGTCGTACGTTTCTTTTTGGGACAGCGTACACTAGGATTACGTCACATCGTTTCACCTGGCAacagagtatttatttatttatttttttagcgaTTAAAATAAGTATGTGTATCGATGCATCCCTGTTTCTGTAATTATTCCGATCCGTCACTGCTTGGAGTTTTTAATTTGTGCCTTTAAGCCTCGGAGATCACATTTCATCCTAAACTAGAAGGAGAACCGCCTTTTCTTCCACACACTACCACATCAGTGTAAACTACAGGGTGTGTGTCGTTTGAGGTTTTTGTAGAAACCTATGGTTTGTTTTAGTTGCGTCTTTAAGGGCTACAGTGTTCTCGCTCGCCAGATGAAGGGCGAGGAGTTTAAAAATAACGCTGCTCTGTGTGGCCATGAAGGACACGATGTGAATTTTTGTGCCAAGATACTCAGTATTTAGCGATGCAGCATTGAAACGTTGGCCTTGTTGTCGTTAAATAGCTGCTAATCTGGACTTCGGTCCGacatccatctctctttctttctctttttctttctctttatttgtgttttaactGCTGAGGAAGGagttattaaaggaatagttcagtgatttttattttttcttttcaacctgatctctatccactgtatgtgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattagcacAGACgagaatttcaacacatttccctgcactgaaaaaaaaattatgagcCTTCAACAAATTAATTCATAATAGAAATCTAAGGCCAGATGTTGAATTTTGTCGATTAAAGGtgtctgtaatgtaaatgaataattcCAGTCAGAGATGGAACAGCTTTTTCCAGAGGAAGAATTTGTGTTCGTGTGTAAAATTGCGTGGCTCTGATGGCGTAAGGATACCATTAAAAAGCGTCAGGAAAGTGTAAAGTAACCGGAACTACTTTTCACTGTATTGCTCCAGTGTTAGAAAGTTTGACACGATCTATAAGAAGAGCTTTAAAactttctctcttaaagttttATGTTTGCATTGTATAGTTGCGTATTCTAACGCTTCTTTAATAACAACAGAATTCAacatctgcccttagacttccattacaaGTGAATTTGGCAGAAAAAACGTTCGGAGTTTTGTGTTCTGTTCTCGGTGCTGGGAAACGTATCAACGTTCTCGTTTGTCGTAGTCtcacactatctctctctctctcacacacacacacacacacacacacacacacactactgataCGGTGTGTAGAGTTTACGTTGAAAATGTTTGGAGTTCTCCTTGAATATGAGGTGCGCTTTGTTTGATGTAGGAGTTTTTAAAAGGATGTAGTTTTGATATAACTCTTAAGGCTTGCAAAAGTAAAGATGTGGAATACGTGATCATAAACGTGCGACGTTACGTGAAAAGAGTGACCCTACGTTCACGCTAACGTGCGATAAGGCTGAGCtgttttctgagagtgtgtgcaaGACGTAGCTACGATTTCAGCAGCATTTAAACTGAGATTTTGTCAATGACGCAGTGAAGAAGCGACAAATGCAAACTCTTGTCTCGAACGATCCTCAGTTTCTTCCTCACAAcgttagttcctacctgcagttaatttacacacacaaatggaaTAAGTGTAGTTTCATCTTATCCGTCTATTAATTAGAGactttacaaaaaagaaaaaaataaagcttggacggaagtagcagagatcgtttgtggttctggtgagtgtacgtagctagtagagatagctcgctttgctaatctgatCTGAGAACGAAGCTAATACGAAGCCGCGCACGTAACAAGTAAATCAAACCAGTGCTTAGTAGCTACGTATAGCtactggacaggccacgcccacgaGCGATACGAGTCACTTGTGTCACTCGTTAGCGTGAACGTAGGGTCGGCGTCATAATGCATGGGGTAGAAACACTGAACGCTAGTGCTGTTACAATGCAAGTAAAATCTTTTTACTCTCAGAATGAACTCTTTAATAATCCCGCATGCCGTTTGTGTACAGATTTTACTTTAACGTGGTACTTTGGAGCTCCGTATCGGGAGTTCAGAGGCTTGTGATTTTGATTGTTTACACAGTAACATGTTCAGCTCTAATCTTATttatcacgtgtgtgtgtttttaaagtgtGCGTTAAGGCTTTATTTAAACTATTGCATATTATTCATGCATATGATGATCATGGTGTGCCTTTTGCACTACATACagaataaacagtttaaatgaATCTGGATTCGTCACTGTTTgaactgtttttaaatttaagattAACTTTAATCCAAGCGTGAAATCGAACCGTGTTCATGCAGATAGCGAGTAGGAATCCGTTTGTCCTGAAActgtttgtcatgttttatgtAAGTGCTTTAAATTCacaataaatcagattttttttaaaaaagaaaagcccttgtctttgtttctttttgactgactaatcatttattcatgttaATTGGATAATCAGAGatgctgatttgtt

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU396860 True 3459 lncRNA 0.39 2 19560978 19564462

Neighbor

gene id symbol gene type direction distance location
zdhhc20b LOC108438268,LOC108256609,LOC107705266,LOC107586722,LOC107590215,LOC107663708 coding downstream 6185 19540783 ~ 19554793 (-)
slc51a LOC108256565 coding downstream 29615 19522615 ~ 19531363 (-)
LOC113541094 pola1 coding downstream 64021 19489318 ~ 19496957 (-)
pola1 pola1,LOC107705179,LOC107666635,LOC107721886,LOC107663691 coding downstream 71595 19439763 ~ 19489383 (-)
hgd hgd,LOC107705246,LOC107721894 coding downstream 149763 19395899 ~ 19411215 (-)
phldb2b LOC108256156,LOC108438454,LOC107586724,LOC107721837 coding upstream 44575 19609037 ~ 19663355 (-)
plcxd2 plcxd2,LOC108256473,LOC103047596,LOC108414136,LOC107671354,LOC107663676,LOC107586725,LOC105905211 coding upstream 107038 19671500 ~ 19676306 (-)
hhla2b.2 NA coding upstream 140079 19704541 ~ 19711461 (-)
LOC113541040 NA coding upstream 147167 19711629 ~ 19716339 (-)
hhla2b.1 NA coding upstream 159374 19723836 ~ 19735685 (-)
G335149 NA non-coding downstream 9448 19551040 ~ 19551530 (-)
G335105 NA non-coding downstream 132720 19391964 ~ 19428258 (-)
LOC117595800 NA non-coding downstream 144906 19414228 ~ 19416072 (-)
G335103 NA non-coding downstream 156089 19359557 ~ 19404889 (-)
G335099 NA non-coding downstream 200240 19317859 ~ 19360738 (-)
G335230 NA non-coding upstream 208391 19772853 ~ 19773057 (-)
G335232 NA non-coding upstream 224121 19788583 ~ 19789058 (-)
G335404 NA non-coding upstream 315430 19879892 ~ 19902336 (-)
G335460 NA non-coding upstream 495562 20060024 ~ 20061159 (-)
G335498 NA non-coding upstream 557054 20121516 ~ 20194381 (-)
pdk3a pdk3,pdk3a,LOC107586717,LOC107705263,LOC107656160,LOC107663620,LOC107590342,LOC107721912 other downstream 39647 19507088 ~ 19521331 (-)
pkia pkia,LOC107666628,LOC107705234 other downstream 545123 19005498 ~ 19015855 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other downstream 1040773 18437514 ~ 18520205 (-)
zmp:0000000991 NA other downstream 1629164 17916084 ~ 17931814 (-)
c22h11orf65 c23h11orf65 other downstream 1644422 17909324 ~ 17916556 (-)
G335165 amer2 other upstream 36265 19600727 ~ 19603693 (-)
cnksr2a cnksr2,cnksr2a other upstream 324577 19889039 ~ 19967804 (-)
G335523 NA other upstream 614950 20179412 ~ 20182412 (-)
cops9 NA other upstream 678026 20242488 ~ 20246311 (-)
otos otos,LOC108440409 other upstream 681989 20246451 ~ 20248461 (-)

Expression


Co-expression Network