G335214


Basic Information

Item Value
gene id G335214
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19766470 ~ 19766826 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU396939
TAGGAATAGAAGTCATGTTGGTATCTGTAGCAGTAGGAATAGTAGTCATGTTGATATCTGTAGCAGTAGGAATAGAAGTCATGGGGGTATCTGTAGTAGCAGGAATAGAATTCATGTTTTTATCTCTGGTAGTAGGAATTGCAGTCATATGGGTATCTGTGGCTGTAGGAATAGAAGTCATGTTGGTATCTGTAGCAGTAGGAATAGTAGTCATGTGGGTATCTGTGGTAGTAGGAATAGAAGTCATGTTGGTATCTGTAGTAGCAGGAATAGAATTCATGGGGGTATCTGTAGTAGCAGCAATAGAATTCATGTTTTTATCTCTGGTAGTAGGAATAGCAGTCATATGGGTATCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU396939 True 357 lncRNA 0.39 1 19766470 19766826

Neighbor

gene id symbol gene type direction distance location
LOC113541258 LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 coding upstream 16415 19740057 ~ 19750055 (+)
amer2 amer2 coding upstream 162700 19600565 ~ 19603770 (+)
mtmr6 mtmr6,LOC107721921,LOC107705267,LOC107590218 coding upstream 173018 19579310 ~ 19593452 (+)
pcyt1ba pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205 coding upstream 259934 19498302 ~ 19506536 (+)
arxa arx,arxa,LOC107586699,LOC107663641 coding upstream 329710 19429768 ~ 19436760 (+)
LOC113541169 klhl34 coding downstream 117221 19884047 ~ 19887557 (+)
sh3kbp1 sh3kbp1,LOC107590295 coding downstream 283910 20050736 ~ 20112391 (+)
map3k15 map3k15,LOC107685453 coding downstream 349188 20116014 ~ 20152049 (+)
LOC113541177 NA coding downstream 397941 20164767 ~ 20167147 (+)
tfr1b NA coding downstream 406274 20173100 ~ 20188652 (+)
G334888 NA non-coding upstream 59464 19704685 ~ 19707006 (+)
G334806 NA non-coding upstream 177410 19561102 ~ 19589060 (+)
LOC117595782 NA non-coding upstream 244210 19521365 ~ 19522260 (+)
G334733 NA non-coding upstream 414718 19345889 ~ 19351752 (+)
G334575 NA non-coding upstream 833219 18933049 ~ 18933251 (+)
G335215 NA non-coding downstream 637 19767463 ~ 19768343 (+)
G335243 NA non-coding downstream 57877 19824703 ~ 19824911 (+)
G335345 NA non-coding downstream 198718 19965544 ~ 20029491 (+)
G335377 NA non-coding downstream 291548 20058374 ~ 20058822 (+)
G335379 NA non-coding downstream 324997 20091823 ~ 20191789 (+)
cip2a kiaa1524 other upstream 62666 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other upstream 82600 19678481 ~ 19683870 (+)
G334838 NA other upstream 189397 19576111 ~ 19577073 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other upstream 338534 19317857 ~ 19427936 (+)
LOC117595806 zfhx4,LOC107590192 other upstream 1018993 18712048 ~ 18747477 (+)
G335231 NA other downstream 21757 19788583 ~ 19789058 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other downstream 103555 19870381 ~ 19882836 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other downstream 218506 19985332 ~ 19988036 (+)
ccl20b NA other downstream 393441 20160267 ~ 20163106 (+)
mynn mynn other downstream 495042 20261868 ~ 20270565 (+)

Expression


Co-expression Network