G335230


Basic Information

Item Value
gene id G335230
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19772853 ~ 19773057 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU396959
gaaaaatcaCCATTTTAGATCCATGAgccatttaaaactgaaaaagagGAACTACACAAGGTGTATATTATGCATGATACAGCACGCTGACACTCTGATCTCCTTCTTGCTAACCAGACACACATTTGACTACAGATGTAAATGCATGTGCTCGTCAGAATACAATCAGGACACAAAGAAAAGTACAGATGAAAATGTGCGGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU396959 True 205 lncRNA 0.38 1 19772853 19773057

Neighbor

gene id symbol gene type direction distance location
hhla2b.1 NA coding downstream 37168 19723836 ~ 19735685 (-)
LOC113541040 NA coding downstream 56514 19711629 ~ 19716339 (-)
hhla2b.2 NA coding downstream 61392 19704541 ~ 19711461 (-)
plcxd2 plcxd2,LOC108256473,LOC103047596,LOC108414136,LOC107671354,LOC107663676,LOC107586725,LOC105905211 coding downstream 96547 19671500 ~ 19676306 (-)
phldb2b LOC108256156,LOC108438454,LOC107586724,LOC107721837 coding downstream 109498 19609037 ~ 19663355 (-)
ptchd1 ptchd1,LOC107705272,LOC107586732,LOC107671345,LOC107663699 coding upstream 28517 19801574 ~ 19815297 (-)
phex phex,LOC107705273,LOC107671358 coding upstream 58953 19832010 ~ 19848495 (-)
mbtps2 mbtps2,LOC107721932,LOC107590223,LOC107586733 coding upstream 86164 19859221 ~ 19866815 (-)
chrnd chrnd coding upstream 199685 19972742 ~ 19987048 (-)
klhl24b LOC108256314,LOC107671351,LOC107586738,LOC107721905,LOC107663692,LOC107590230,LOC103026629,LOC108443641 coding upstream 253679 20026736 ~ 20047169 (-)
G335150 NA non-coding downstream 208391 19560978 ~ 19564462 (-)
G335149 NA non-coding downstream 221323 19551040 ~ 19551530 (-)
G335105 NA non-coding downstream 344595 19391964 ~ 19428258 (-)
LOC117595800 NA non-coding downstream 356781 19414228 ~ 19416072 (-)
G335103 NA non-coding downstream 367964 19359557 ~ 19404889 (-)
G335232 NA non-coding upstream 15526 19788583 ~ 19789058 (-)
G335404 NA non-coding upstream 106835 19879892 ~ 19902336 (-)
G335460 NA non-coding upstream 286967 20060024 ~ 20061159 (-)
G335498 NA non-coding upstream 348459 20121516 ~ 20194381 (-)
LOC113541188 NA non-coding upstream 394260 20167317 ~ 20172924 (-)
G335165 amer2 other downstream 169160 19600727 ~ 19603693 (-)
nup58 nup58,LOC107721897,LOC107590217 other downstream 193822 19555141 ~ 19579031 (-)
pdk3a pdk3,pdk3a,LOC107586717,LOC107705263,LOC107656160,LOC107663620,LOC107590342,LOC107721912 other downstream 251522 19507088 ~ 19521331 (-)
pkia pkia,LOC107666628,LOC107705234 other downstream 756998 19005498 ~ 19015855 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other downstream 1252648 18437514 ~ 18520205 (-)
cnksr2a cnksr2,cnksr2a other upstream 115982 19889039 ~ 19967804 (-)
G335523 NA other upstream 406355 20179412 ~ 20182412 (-)
cops9 NA other upstream 469431 20242488 ~ 20246311 (-)
otos otos,LOC108440409 other upstream 473394 20246451 ~ 20248461 (-)
fndc3bb fndc3b,fndc3bb,LOC108434945 other upstream 724031 20497088 ~ 20557959 (-)

Expression


Co-expression Network