G335231


Basic Information

Item Value
gene id G335231
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19788583 ~ 19789058 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU396960
tttagatcttatttaactgatcgttatcagtttgtagatgtaaacggtgaccactcagcacgttatcgagtagaatatggcgttccgcagggttcagtcttaggcccactgcttttcacgttatacatgctccctttaggtaacataatccgcaaacataatattagcttccattgttatgctgatgacacacagttatacgtctcagctaggccagatgagaatagccagttaaagaaagttgaggcatgtgcgatagacataagagactggatgctaagcaactttctcctgctaaacccagaaaaaacagaggttctggtactgggaccacaagccgctagaagtaagtttagagatcacactgttactttagacggtctctctgtttcaagtagtctaacagtaaaagatctcggtgtgattatagactctaatctctcatttgaggcgcatgtagataatgtaagcaggtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU396960 True 476 TUCP 0.41 1 19788583 19789058

Neighbor

gene id symbol gene type direction distance location
LOC113541258 LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 coding upstream 38528 19740057 ~ 19750055 (+)
amer2 amer2 coding upstream 184813 19600565 ~ 19603770 (+)
mtmr6 mtmr6,LOC107721921,LOC107705267,LOC107590218 coding upstream 195131 19579310 ~ 19593452 (+)
pcyt1ba pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205 coding upstream 282047 19498302 ~ 19506536 (+)
arxa arx,arxa,LOC107586699,LOC107663641 coding upstream 351823 19429768 ~ 19436760 (+)
LOC113541169 klhl34 coding downstream 94989 19884047 ~ 19887557 (+)
sh3kbp1 sh3kbp1,LOC107590295 coding downstream 261678 20050736 ~ 20112391 (+)
map3k15 map3k15,LOC107685453 coding downstream 326956 20116014 ~ 20152049 (+)
LOC113541177 NA coding downstream 375709 20164767 ~ 20167147 (+)
tfr1b NA coding downstream 384042 20173100 ~ 20188652 (+)
G335215 NA non-coding upstream 20240 19767463 ~ 19768343 (+)
G335214 NA non-coding upstream 21757 19766470 ~ 19766826 (+)
G334888 NA non-coding upstream 81577 19704685 ~ 19707006 (+)
G334806 NA non-coding upstream 199523 19561102 ~ 19589060 (+)
LOC117595782 NA non-coding upstream 266323 19521365 ~ 19522260 (+)
G335243 NA non-coding downstream 35645 19824703 ~ 19824911 (+)
G335345 NA non-coding downstream 176486 19965544 ~ 20029491 (+)
G335377 NA non-coding downstream 269316 20058374 ~ 20058822 (+)
G335379 NA non-coding downstream 302765 20091823 ~ 20191789 (+)
G335381 NA non-coding downstream 385720 20174778 ~ 20189323 (+)
cip2a kiaa1524 other upstream 84779 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other upstream 104713 19678481 ~ 19683870 (+)
G334838 NA other upstream 211510 19576111 ~ 19577073 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other upstream 360647 19317857 ~ 19427936 (+)
LOC117595806 zfhx4,LOC107590192 other upstream 1041106 18712048 ~ 18747477 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other downstream 81323 19870381 ~ 19882836 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other downstream 196274 19985332 ~ 19988036 (+)
ccl20b NA other downstream 371209 20160267 ~ 20163106 (+)
mynn mynn other downstream 472810 20261868 ~ 20270565 (+)
lrrc34 lrrc34 other downstream 485062 20274120 ~ 20281252 (+)

Expression


Co-expression Network