G335243


Basic Information

Item Value
gene id G335243
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19824703 ~ 19824911 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU396972
CAGGATTCACTGACTCAGGATTCAAATCCTCTGACACTGACTCTCTGACTAAGGATTTACcgattcaaacactgactcatTGATTCTGGATTAGACTGACTCACTGACAGGAATCACTGCTTCATCGAATCAGGATACACTGATTCAAatactgactcactgattcaagATTCACACTAACACAAATACTGACTCAGGATCCATTGAAT

Function

GO: NA

KEGG:

id description
ko04724 Glutamatergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU396972 True 209 lncRNA 0.40 1 19824703 19824911

Neighbor

gene id symbol gene type direction distance location
LOC113541258 LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 coding upstream 74648 19740057 ~ 19750055 (+)
amer2 amer2 coding upstream 220933 19600565 ~ 19603770 (+)
mtmr6 mtmr6,LOC107721921,LOC107705267,LOC107590218 coding upstream 231251 19579310 ~ 19593452 (+)
pcyt1ba pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205 coding upstream 318167 19498302 ~ 19506536 (+)
arxa arx,arxa,LOC107586699,LOC107663641 coding upstream 387943 19429768 ~ 19436760 (+)
LOC113541169 klhl34 coding downstream 59136 19884047 ~ 19887557 (+)
sh3kbp1 sh3kbp1,LOC107590295 coding downstream 225825 20050736 ~ 20112391 (+)
map3k15 map3k15,LOC107685453 coding downstream 291103 20116014 ~ 20152049 (+)
LOC113541177 NA coding downstream 339856 20164767 ~ 20167147 (+)
tfr1b NA coding downstream 348189 20173100 ~ 20188652 (+)
G335215 NA non-coding upstream 56360 19767463 ~ 19768343 (+)
G335214 NA non-coding upstream 57877 19766470 ~ 19766826 (+)
G334888 NA non-coding upstream 117697 19704685 ~ 19707006 (+)
G334806 NA non-coding upstream 235643 19561102 ~ 19589060 (+)
LOC117595782 NA non-coding upstream 302443 19521365 ~ 19522260 (+)
G335345 NA non-coding downstream 140633 19965544 ~ 20029491 (+)
G335377 NA non-coding downstream 233463 20058374 ~ 20058822 (+)
G335379 NA non-coding downstream 266912 20091823 ~ 20191789 (+)
G335381 NA non-coding downstream 349867 20174778 ~ 20189323 (+)
G335383 NA non-coding downstream 382613 20207524 ~ 20208617 (+)
G335231 NA other upstream 35645 19788583 ~ 19789058 (+)
cip2a kiaa1524 other upstream 120899 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other upstream 140833 19678481 ~ 19683870 (+)
G334838 NA other upstream 247630 19576111 ~ 19577073 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other upstream 396767 19317857 ~ 19427936 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other downstream 45470 19870381 ~ 19882836 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other downstream 160421 19985332 ~ 19988036 (+)
ccl20b NA other downstream 335356 20160267 ~ 20163106 (+)
mynn mynn other downstream 436957 20261868 ~ 20270565 (+)
lrrc34 lrrc34 other downstream 449209 20274120 ~ 20281252 (+)

Expression


Co-expression Network