camk2n2 (camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800)


Basic Information

Item Value
gene id camk2n2
gene name camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19985332 ~ 19988036 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397044
ACCCGAACCCGAACCTGAACCTGTTCCCGTTTTCCAGTTttgaacatctctctctctctctctctctcacacacacacacacacacactttcttgtCTTCAGCCATGTCCGAGGTTTTGCCCTACAGTGAGGGGAAGATGAACGGCTACGGGCCGGACGACGAGGTCGGACAAATGTCGTTCAGCTGCCGGCTGCAGGACACCAACTCGTTTTTCGGCGCGTCGCAGTCAAAAAGGCCGCCGAAACTCGGACAGATCGGACGCGCAAAACACGtgGTCATTGAAGACGACCGAATAGACGAGGTGCTGAAAGGCATGGCGGATAAACCGTCCCCCGGTGTGTAGAGCCTCCAGACGCATAAGaacctttttttgcatttaatcaCCGGTTTGAAGCACCGCATGTAAAGCAGTGAGGAGCGACTGAGAAGCCTCTGAGGATCAGGATGCTGAGAGCGGACTGAggaagagatgatgatgatgatgatgatgatgatgatggactgACAGGACATGACATGACCGCGGGTGTTGGGTTTTAAGGCTGAAAAAATAATAAGCGGAATTTTCTTTCCAAGCTGCTGGTTTAGCTTATAATCCTCCAAACAAAACCCATCTAGATAAATCCACCTCCTTCATCACAGCGATGAGAAGAAGACCTGCTCGGGTCCGACTTCATCCGTCATCACGATATCAGTATTCAGTATCGGACATCGGTATCGGTTTTAGTGCCACGTTTCATCGATGTAGCTGCGTTCACGTGCTGTCGGAGATCGTAGGAGTAAATACGGGTCACGAGCTCACACATGACGCAACACTCAGTTTTAATAGTAGATAGAAATGAAATGCAACAGTTGATGATAATTgtgtgcatgcaaaaaaaaacctgcatgacATTTCAACTGTAGGATTATTCAGCgctatttaatattaatgtgttagACTAGAACTGTGCACTCTTAGAAATAACGGTTCCAACCTGCACTCTTTCCTGTCAGGCAGTTGCTACCTTCCAAGGTACATGTTGTTCATCATTAATTAAGCTTTAAAGGGACATCATTTCTCCTTTAGCTCCAATGAAACACCTTCAATTAGTTTTACAACAACAAGAAAAGTACCTTGGCACCTTTCCCTGTCCCACTGCAGCCTGAACATCAAGTCACAGTTTGTGTTTGCTTGCTATAGGCTAGCTGGGGTGTTCATTACGTAACACCCACACACCATGctctgttgttgtttatttccaCTTCCGGCTTCCGCGTCATGCCCTAATTACACACTTCCGACCCGGAAACATAGGAGCGCTTGAACGTAGCATGAGCttattttaaagtttaacatcacacacacacacacacacacacacggaacagGCCTGGTcctggtgggtgtgtgtgtcaacCAGAGAAGAAGACATCTGCAAATCTGAGTAAAATATGCTAATGATATGTTAATGATATGATAATGATATGGTAATGATATGATAATTATCCCCATAAACACAGCAGGTTAAGAGCAGATGAACATGAAGTTTACATCCAACGCCAGCAAGGATCTAAAAGAACACAGAAGTACTAATAatcattctgatttttttaaaggacaaGGAGGATATCTAGTTTATTtcctttcatcttttttttaatgtttggcGTCGTGTATATATGAAAATCTCTTGGTGATTGAGTTTGCATGAACTTTGTGCCAATGCGGGTGTCTCTAAAACCCCTTCTTTTTACTGAagttaatatttgtatttaatattttttataaataaatatttgttactTAATATGGTATGCTAGTGAGCATTcagaggaataataataataataataataataataataataataataataataataatggaatgTTTCGGATTTTTGAATACATCAGCATATTATTATTGCTTGTCATTccaaaactgaaaatatttttactccATTTCATTTTTCCATCAAGTCATCTAACACAGTgttattcacttttattttaaaatatctacttatttatttatttatttatttattttattttatactattcTGTATGGTTTGTTGTGCATGAAATCTTGATATTTtccaaatgaatgaacatttttataaagCGAAAAAAAAGTTTCGTCTCAGCATTTATGGAGAATGAACCATTGTGTACTCTGATGCCATTTCACTGTACTTGCTGAGTTAATAAATAGAGACAGAAGTTGTCAA
>XM_026938021.2
ACTTCACTTTTCCGCCTGGGTGTTCCTTTATGGTCTTTGGGATCTCCCTGCGTTTTTCCACCAGAGCTGCGCGCATCACCACCAAtccctgtctctccctctctctctctccttctctctctccttctctctctctctctctctctctgttaccaTAACAGCTCACTGAGTCCGGAGTCGGAGCGAGCGCGCGCTGCTGGAGTTTACACTCAACCCGAACCCGAACCTGAACCTGTTCCCGTTTTCCAGTTttgaacatctctctctctctctctctctcacacacacacacacacacactttcttgtCTTCAGCCATGTCCGAGGTTTTGCCCTACAGTGAGGGGAAGATGAACGGCTACGGGCCGGACGACGAGGTCGGACAAATGTCGTTCAGCTGCCGGCTGCAGGACACCAACTCGTTTTTCGGCGCGTCGCAGTCAAAAAGGCCGCCGAAACTCGGACAGATCGGACGCGCAAAACACGtgGTCATTGAAGACGACCGAATAGACGAGGTGCTGAAAGGCATGGCGGATAAACCGTCCCCCGGTGTGTAGAGCCTCCAGACGCATAAGaacctttttttgcatttaatcaCCGGTTTGAAGCACCGCATGTAAAGCAGTGAGGAGCGACTGAGAAGCCTCTGAGGATCAGGATGCTGAGAGCGGACTGAggaagagatgatgatgatgatgatgatgatgatgatggactgACAGGACATGACATGACCGCGGGTGTTGGGTTTTAAGGCTGAAAAAATAATAAGCGGAATTTTCTTTCCAAGCTGCTGGTTTAGCTTATAATCCTCCAAACAAAACCCATCTAGATAAATCCACCTCCTTCATCACAGCGATGAGAAGAAGACCTGCTCGGGTCCGACTTCATCCGTCATCACGATATCAGTATTCAGTATCGGACATCGGTATCGGTTTTAGTGCCACGTTTCATCGATGTAGCTGCGTTCACGTGCTGTCGGAGATCGTAGGAGTAAATACGGGTCACGAGCTCACACATGACGCAACACTCAGTTTTAATAGTAGATAGAAATGAAATGCAACAGTTGATGATAATTgtgtgcatgcaaaaaaaaacctgcatgacATTTCAACTGTAGGATTATTCAGCgctatttaatattaatgtgttagACTAGAACTGTGCACTCTTAGAAATAACGGTTCCAACCTGCACTCTTTCCTGTCAGGCAGTTGCTACCTTCCAAGGTACATGTTGTTCATCATTAATTAAGCTTTAAAGGGACATCATTTCTCCTTTAGCTCCAATGAAACACCTTCAATTAGTTTTACAACAACAAGAAAAGTACCTTGGCACCTTTCCCTGTCCCACTGCAGCCTGAACATCAAGTCACAGTTTGTGTTTGCTTGCTATAGGCTAGCTGGGGTGTTCATTACGTAACACCCACACACCATGctctgttgttgtttatttccaCTTCCGGCTTCCGCGTCATGCCCTAATTACACACTTCCGACCCGGAAACATAGGAGCGCTTGAACGTAGCATGAGCttattttaaagtttaacatcacacacacacacacacacacacacggaacagGCCTGGTcctggtgggtgtgtgtgtcaacCAGAGAAGAAGACATCTGCAAATCTGAGTAAAATATGCTAATGATATGTTAATGATATGATAATGATATGGTAATGATATGATAATTATCCCCATAAACACAGCAGGTTAAGAGCAGATGAACATGAAGTTTACATCCAACGCCAGCAAGGATCTAAAAGAACACAGAAGTACTAATAatcattctgatttttttaaaggacaaGGAGGATATCTAGTTTATTtcctttcatcttttttttaatgtttggcGTCGTGTATATATGAAAATCTCTTGGTGATTGAGTTTGCATGAACTTTGTGCCAATGCGGGTGTCTCTAAAACCCCTTCTTTTTACTGAagttaatatttgtatttaatattttttataaataaatatttgttactTAATATGGTATGCTAGTGAGCATTcagaggaataataataataataataataataataataataataataataataataatggaatgTTTCGGATTTTTGAATACATCAGCATATTATTATTGCTTGTCATTccaaaactgaaaatatttttactccATTTCATTTTTCCATCAAGTCATCTAACACAGTgttattcacttttattttaaaatatctacttatttatttatttatttatttattttattttatactattcTGTATGGTTTGTTGTGCATGAAATCTTGATATTTtccaaatgaatgaacatttttataaagCGAAAAAAAAGTTTCGTCTCAGCATTTATGGAGAATGAACCATTGTGTACTCTGATGCCATTTCACTGTACTTGCTGAGTTAATAAATAGAGACAGAAGTTGTCAA

Function

symbol description
camk2n2 Enables protein kinase binding activity. Acts upstream of or within negative regulation of protein kinase activity. Is expressed in axial chorda mesoderm; nervous system; notochord; ovary; and somite. Orthologous to human CAMK2N2 (calcium/calmodulin dependent protein kinase II inhibitor 2).

NR:

description
PREDICTED: calcium/calmodulin-dependent protein kinase II inhibitor 2-like

GO:

id name namespace
GO:0006469 negative regulation of protein kinase activity biological_process
GO:0004860 protein kinase inhibitor activity molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU397044 False 2215 lncRNA 0.40 2 19985544 19988036
XM_026938021.2 True 2427 mRNA 0.41 2 19985332 19988036

Neighbor

gene id symbol gene type direction distance location
LOC113541169 klhl34 coding upstream 97775 19884047 ~ 19887557 (+)
LOC113541258 LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 coding upstream 235277 19740057 ~ 19750055 (+)
amer2 amer2 coding upstream 381562 19600565 ~ 19603770 (+)
mtmr6 mtmr6,LOC107721921,LOC107705267,LOC107590218 coding upstream 391880 19579310 ~ 19593452 (+)
pcyt1ba pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205 coding upstream 478796 19498302 ~ 19506536 (+)
sh3kbp1 sh3kbp1,LOC107590295 coding downstream 62700 20050736 ~ 20112391 (+)
map3k15 map3k15,LOC107685453 coding downstream 127978 20116014 ~ 20152049 (+)
LOC113541177 NA coding downstream 176731 20164767 ~ 20167147 (+)
tfr1b NA coding downstream 185064 20173100 ~ 20188652 (+)
tnk2a LOC108256568,LOC108440396,LOC107685449,LOC107725874 coding downstream 206024 20194060 ~ 20207270 (+)
G335243 NA non-coding upstream 160421 19824703 ~ 19824911 (+)
G335215 NA non-coding upstream 216989 19767463 ~ 19768343 (+)
G335214 NA non-coding upstream 218506 19766470 ~ 19766826 (+)
G334888 NA non-coding upstream 278326 19704685 ~ 19707006 (+)
G334806 NA non-coding upstream 396272 19561102 ~ 19589060 (+)
G335377 NA non-coding downstream 70338 20058374 ~ 20058822 (+)
G335379 NA non-coding downstream 103787 20091823 ~ 20191789 (+)
G335381 NA non-coding downstream 186742 20174778 ~ 20189323 (+)
G335383 NA non-coding downstream 219488 20207524 ~ 20208617 (+)
G335558 NA non-coding downstream 272535 20260571 ~ 20260807 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other upstream 102496 19870381 ~ 19882836 (+)
G335231 NA other upstream 196274 19788583 ~ 19789058 (+)
cip2a kiaa1524 other upstream 281528 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other upstream 301462 19678481 ~ 19683870 (+)
G334838 NA other upstream 408259 19576111 ~ 19577073 (+)
ccl20b NA other downstream 172231 20160267 ~ 20163106 (+)
mynn mynn other downstream 273832 20261868 ~ 20270565 (+)
lrrc34 lrrc34 other downstream 286084 20274120 ~ 20281252 (+)
vipr2 vipr2,LOC107656837 other downstream 756713 20744749 ~ 20764373 (+)

Expression


Co-expression Network