G335345


Basic Information

Item Value
gene id G335345
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19965544 ~ 20029491 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397088
cacacatacacatacacacacacacacacacacacacacacgcCCGACACCTGATCCTcggctcagtgtgtgtgtgaggaggaaaGAGCTAAGGGGGTCATGAGTGGTAGAACTTCTCGTTATAGCGGTGGATGGTCACGCAGCCGTGGTAGGAGATGGGGCGTGGCATCGCCGCTACACCTGTGATGATCCCTGTGGCCGGATCGTAGCACAGGATGGTGTCCGACGCCTCGCCGCTCTCGCTGCGACCGCCCAGGATGTAGATCTTCCCATTACACACTGACATCCCACAgctctcctacacacacacacacacacacacacacacacacagagagagagagagagagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU397088 True 356 lncRNA 0.56 2 19965544 20029491

Neighbor

gene id symbol gene type direction distance location
LOC113541169 klhl34 coding upstream 77987 19884047 ~ 19887557 (+)
LOC113541258 LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 coding upstream 215489 19740057 ~ 19750055 (+)
amer2 amer2 coding upstream 361774 19600565 ~ 19603770 (+)
mtmr6 mtmr6,LOC107721921,LOC107705267,LOC107590218 coding upstream 372092 19579310 ~ 19593452 (+)
pcyt1ba pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205 coding upstream 459008 19498302 ~ 19506536 (+)
sh3kbp1 sh3kbp1,LOC107590295 coding downstream 21245 20050736 ~ 20112391 (+)
map3k15 map3k15,LOC107685453 coding downstream 86523 20116014 ~ 20152049 (+)
LOC113541177 NA coding downstream 135276 20164767 ~ 20167147 (+)
tfr1b NA coding downstream 143609 20173100 ~ 20188652 (+)
tnk2a LOC108256568,LOC108440396,LOC107685449,LOC107725874 coding downstream 164569 20194060 ~ 20207270 (+)
G335243 NA non-coding upstream 140633 19824703 ~ 19824911 (+)
G335215 NA non-coding upstream 197201 19767463 ~ 19768343 (+)
G335214 NA non-coding upstream 198718 19766470 ~ 19766826 (+)
G334888 NA non-coding upstream 258538 19704685 ~ 19707006 (+)
G334806 NA non-coding upstream 376484 19561102 ~ 19589060 (+)
G335377 NA non-coding downstream 28883 20058374 ~ 20058822 (+)
G335379 NA non-coding downstream 62332 20091823 ~ 20191789 (+)
G335381 NA non-coding downstream 145287 20174778 ~ 20189323 (+)
G335383 NA non-coding downstream 178033 20207524 ~ 20208617 (+)
G335558 NA non-coding downstream 231080 20260571 ~ 20260807 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other upstream 82708 19870381 ~ 19882836 (+)
G335231 NA other upstream 176486 19788583 ~ 19789058 (+)
cip2a kiaa1524 other upstream 261740 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other upstream 281674 19678481 ~ 19683870 (+)
G334838 NA other upstream 388471 19576111 ~ 19577073 (+)
ccl20b NA other downstream 130776 20160267 ~ 20163106 (+)
mynn mynn other downstream 232377 20261868 ~ 20270565 (+)
lrrc34 lrrc34 other downstream 244629 20274120 ~ 20281252 (+)
vipr2 vipr2,LOC107656837 other downstream 715258 20744749 ~ 20764373 (+)

Expression


Co-expression Network