G335381


Basic Information

Item Value
gene id G335381
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20174778 ~ 20189323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397133
tattattattattattattattattattattattattattattaacgataaaatacagtatataaaaatttgatatttataaatgaatcagCAGAAGTAACCTGCTGTAAGCACACGGTTCGCGACACGTGCACTTGTTTCTCAGTTTCTGACTTGCTGAGGTTTGATTTAACCCTCGACGGCGCAGTCGTGTCCTAACGGGTCAGAATTAAAAAGCTAATCGGATGTTTAATTCTGTTTCATTCACTTGCACTTGAACGAGAGTCCAAACGAAATTCCTcgcgggggaaaaaaaacactgcttttgGGTCATGTTTTTTGTCATGTATGATTTTTGACCTGTTTTGCATGGAGAGAAATGTGTttgtc
>TU397134
tattattattattattattattattattattattattattattaacgataaaatacagtatataaaaatttgatatttataaatgaatcagCAGAAGTAACCTGCTGTAAGCACACGGTTCGCGACACGTGCACTTGTTTCTCAGTTTCTGACTTGCTGAGGTTTGATTTAACCCTCGACGGCGCAGTCGTGTCCTAACGGGTCAGAATTAAAAAGCTAATCGGATGTTTAATTCTGTTTCATTCACTTGCACTTGAACGAGAGTCCAAACGAAATTCCTcgcgggggaaaaaaaacactgcttttgGGTCATGTTTTTTGTCATGTATGATTTTTGACCTGTTTTGCATGGAGAGAAATGTGTttgtc

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0051180 vitamin transport biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU397133 True 369 lncRNA 0.35 2 20174778 20189323
TU397134 False 369 lncRNA 0.35 2 20174989 20189323

Neighbor

gene id symbol gene type direction distance location
LOC113541177 NA coding upstream 7631 20164767 ~ 20167147 (+)
map3k15 map3k15,LOC107685453 coding upstream 22729 20116014 ~ 20152049 (+)
sh3kbp1 sh3kbp1,LOC107590295 coding upstream 62387 20050736 ~ 20112391 (+)
LOC113541169 klhl34 coding upstream 287221 19884047 ~ 19887557 (+)
LOC113541258 LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 coding upstream 424723 19740057 ~ 19750055 (+)
tnk2a LOC108256568,LOC108440396,LOC107685449,LOC107725874 coding downstream 4737 20194060 ~ 20207270 (+)
tmtopsb tmtopsb,LOC108256142,LOC108440411,LOC107586803,LOC107685448 coding downstream 26771 20216094 ~ 20228940 (+)
LOC113541175 LOC108256633 coding downstream 65060 20254383 ~ 20259930 (+)
si:ch211-230g15.5 phc3 coding downstream 128405 20317728 ~ 20333594 (+)
cldn11b cldn11 coding downstream 145289 20334612 ~ 20339784 (+)
G335377 NA non-coding upstream 115956 20058374 ~ 20058822 (+)
G335345 NA non-coding upstream 145287 19965544 ~ 20029491 (+)
G335243 NA non-coding upstream 349867 19824703 ~ 19824911 (+)
G335215 NA non-coding upstream 406435 19767463 ~ 19768343 (+)
G335214 NA non-coding upstream 407952 19766470 ~ 19766826 (+)
G335383 NA non-coding downstream 18201 20207524 ~ 20208617 (+)
G335558 NA non-coding downstream 71248 20260571 ~ 20260807 (+)
G335563 eif5a2,eif5a,LOC107685442,LOC107590245,LOC107586748 non-coding downstream 96758 20286081 ~ 20371855 (+)
G335582 NA non-coding downstream 111263 20300586 ~ 20300899 (+)
G335564 NA non-coding downstream 175094 20364417 ~ 20366758 (+)
ccl20b NA other upstream 11672 20160267 ~ 20163106 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other upstream 186742 19985332 ~ 19988036 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other upstream 291942 19870381 ~ 19882836 (+)
G335231 NA other upstream 385720 19788583 ~ 19789058 (+)
cip2a kiaa1524 other upstream 470974 19636868 ~ 19703804 (+)
mynn mynn other downstream 72545 20261868 ~ 20270565 (+)
lrrc34 lrrc34 other downstream 84797 20274120 ~ 20281252 (+)
vipr2 vipr2,LOC107656837 other downstream 555426 20744749 ~ 20764373 (+)

Expression


Co-expression Network