ccl20b


Basic Information

Item Value
gene id ccl20b
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20160267 ~ 20163106 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397154
ccaggagataagGTTAAAAAAAGGGCGCTCTgcgatatatacacacacacatgttgtaAGTcttcccagagagagagagagagagagagagagagaaaggaagacgGATACAACATCATGGCTATGGTTACGATTCCTACTGGGACTTTTCTGTTCGTCCTCATCCTCACTGCCTTCATCATGGACACAGAAACAGCACGATGCTGCTTTTCCTACACGCAGAAGCCGGTTCGCTGCGGCCGGCTGAAAGGCTACTCCATCCAGGAGATCACCGGAAACTGCGACATCAGAGCTATAATATTCGAGACCTGGAACGGGAAATTCATCTGCGCTGATCCGAAGATGAGATGGACTCAAGACAGGATCACGTGCCTACGgaagAAGGCTGCAGTAATGGGGGACACTGGAACGCTGAACTGAGGACGAGCTCCAGTTCACAGCTTTAACTTCAGACTCAGAAGTGAAATTATTACCACATGaagtctttatttttctttattagagCATCTTAAAGGTGTGCTTTTCTACTTCCATTAGAATTTTGGCCCCGTGTGGAGGCCACAGTCTTACATTCACATATTGTGCACTTTGGTACTCAGAGGATACCGAAGGAGTTTCTAATACAAAGATATtttggtttatattatatataaatatatattttttaaattacaaatatgaAAAGTAAACAATGCCGTATTTATGGATGTGGTTTGTCTTGGGGAAATGCACTTCTTCCTTCTgtataaatcacaaaaataaatatttttttaacaagcatCAGTTTTCATGAAATGTATAAACGCACAATACAATATGtccaatttttgtttttaaaaaaagaacgaaA
>XM_026938016.2
GTGTTTACAATGGGAGGAATCAGGAAGGATTAATCCAGCGGGTGACTGCACAGTTCCACCTGCCACAGAaggactcaaaaaaaaaaaaagagagagagaaaaaaacgaCCAATGATATCCGTGtgggaaaatcccaggagataagGTTAAAAAAAGGGCGCTCTgcgatatatacacacacacatgttgtaAGTcttcccagagagagagagagagagagagagagagaaaggaagacgGATACAACATCATGGCTATGGTTACGATTCCTACTGGGACTTTTCTGTTCGTCCTCATCCTCACTGCCTTCATCATGGACACAGAAACAGCACGATGCTGCTTTTCCTACACGCAGAAGCCGGTTCGCTGCGGCCGGCTGAAAGGCTACTCCATCCAGGAGATCACCGGAAACTGCGACATCAGAGCTATAATATTCGAGACCTGGAACGGGAAATTCATCTGCGCTGATCCGAAGATGAGATGGACTCAAGACAGGATCACGTGCCTACGgaagAAGGCTGCAGTAATGGGGGACACTGGAACGCTGAACTGAGGACGAGCTCCAGTTCACAGCTTTAACTTCAGACTCAGAAGTGAAATTATTACCACATGaagtctttatttttctttattagagCATCTTAAAGGTGTGCTTTTCTACTTCCATTAGAATTTTGGCCCCGTGTGGAGGCCACAGTCTTACATTCACATATTGTGCACTTTGGTACTCAGAGGATACCGAAGGAGTTTCTAATACAAAGATATtttggtttatattatatataaatatatattttttaaattacaaatatgaAAAGTAAACAATGCCGTATTTATGGATGTGGTTTGTCTTGGGGAAATGCACTTCTTCCTTCTgtataaatcacaaaaataaatatttttttaacaagca

Function

NR:

description
chemokine CK-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU397154 False 850 TUCP 0.40 4 20160400 20163106
XM_026938016.2 True 913 mRNA 0.42 4 20160267 20163036

Neighbor

gene id symbol gene type direction distance location
map3k15 map3k15,LOC107685453 coding upstream 8218 20116014 ~ 20152049 (+)
sh3kbp1 sh3kbp1,LOC107590295 coding upstream 47876 20050736 ~ 20112391 (+)
LOC113541169 klhl34 coding upstream 272710 19884047 ~ 19887557 (+)
LOC113541258 LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 coding upstream 410212 19740057 ~ 19750055 (+)
amer2 amer2 coding upstream 556497 19600565 ~ 19603770 (+)
LOC113541177 NA coding downstream 1661 20164767 ~ 20167147 (+)
tfr1b NA coding downstream 9994 20173100 ~ 20188652 (+)
tnk2a LOC108256568,LOC108440396,LOC107685449,LOC107725874 coding downstream 30954 20194060 ~ 20207270 (+)
tmtopsb tmtopsb,LOC108256142,LOC108440411,LOC107586803,LOC107685448 coding downstream 52988 20216094 ~ 20228940 (+)
LOC113541175 LOC108256633 coding downstream 91277 20254383 ~ 20259930 (+)
G335377 NA non-coding upstream 101445 20058374 ~ 20058822 (+)
G335345 NA non-coding upstream 130776 19965544 ~ 20029491 (+)
G335243 NA non-coding upstream 335356 19824703 ~ 19824911 (+)
G335215 NA non-coding upstream 391924 19767463 ~ 19768343 (+)
G335214 NA non-coding upstream 393441 19766470 ~ 19766826 (+)
G335381 NA non-coding downstream 11672 20174778 ~ 20189323 (+)
G335383 NA non-coding downstream 44418 20207524 ~ 20208617 (+)
G335558 NA non-coding downstream 97465 20260571 ~ 20260807 (+)
G335563 eif5a2,eif5a,LOC107685442,LOC107590245,LOC107586748 non-coding downstream 122975 20286081 ~ 20371855 (+)
G335582 NA non-coding downstream 137480 20300586 ~ 20300899 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other upstream 172231 19985332 ~ 19988036 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other upstream 277431 19870381 ~ 19882836 (+)
G335231 NA other upstream 371209 19788583 ~ 19789058 (+)
cip2a kiaa1524 other upstream 456463 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other upstream 476397 19678481 ~ 19683870 (+)
mynn mynn other downstream 98762 20261868 ~ 20270565 (+)
lrrc34 lrrc34 other downstream 111014 20274120 ~ 20281252 (+)
vipr2 vipr2,LOC107656837 other downstream 581643 20744749 ~ 20764373 (+)

Expression


Co-expression Network