G335558


Basic Information

Item Value
gene id G335558
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20260571 ~ 20260807 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397353
cacacacacacacacacacacacacaccctgatcagccgtaacattaaacCCACTGAGATCTGAAGTGAGTAacgttgattatctcgttacagtagcacctgtaaaggtgagggatttattaagcagcaagtgaacagtcagttctcgaagttgatgtgttggaagcaggaaaaatgggcaagcgtaagagtctgagtgactttgacaagctCCAAACTCTGAtgtctagacgactg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU397353 True 237 lncRNA 0.45 1 20260571 20260807

Neighbor

gene id symbol gene type direction distance location
LOC113541175 LOC108256633 coding upstream 641 20254383 ~ 20259930 (+)
tmtopsb tmtopsb,LOC108256142,LOC108440411,LOC107586803,LOC107685448 coding upstream 31631 20216094 ~ 20228940 (+)
tnk2a LOC108256568,LOC108440396,LOC107685449,LOC107725874 coding upstream 53301 20194060 ~ 20207270 (+)
tfr1b NA coding upstream 71919 20173100 ~ 20188652 (+)
LOC113541177 NA coding upstream 93424 20164767 ~ 20167147 (+)
si:ch211-230g15.5 phc3 coding downstream 56921 20317728 ~ 20333594 (+)
cldn11b cldn11 coding downstream 73805 20334612 ~ 20339784 (+)
LOC117595803 ghsr,LOC107685461,LOC107586810,LOC107725860,LOC107721864 coding downstream 232525 20493332 ~ 20496346 (+)
LOC117595765 NA coding downstream 319773 20580580 ~ 20581545 (+)
larp4b larp4b coding downstream 331879 20592686 ~ 20612322 (+)
G335383 NA non-coding upstream 51954 20207524 ~ 20208617 (+)
G335379 NA non-coding upstream 68782 20091823 ~ 20191789 (+)
G335381 NA non-coding upstream 71248 20174778 ~ 20189323 (+)
G335377 NA non-coding upstream 201749 20058374 ~ 20058822 (+)
G335345 NA non-coding upstream 231080 19965544 ~ 20029491 (+)
G335563 eif5a2,eif5a,LOC107685442,LOC107590245,LOC107586748 non-coding downstream 25274 20286081 ~ 20371855 (+)
G335582 NA non-coding downstream 39779 20300586 ~ 20300899 (+)
G335564 NA non-coding downstream 103610 20364417 ~ 20366758 (+)
G335593 NA non-coding downstream 117600 20378407 ~ 20380717 (+)
G335619 NA non-coding downstream 163405 20424212 ~ 20425303 (+)
ccl20b NA other upstream 97465 20160267 ~ 20163106 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other upstream 272535 19985332 ~ 19988036 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other upstream 377735 19870381 ~ 19882836 (+)
G335231 NA other upstream 471513 19788583 ~ 19789058 (+)
si:ch73-264p11.1 sh21b other upstream 576701 19678481 ~ 19683870 (+)
mynn mynn other downstream 1061 20261868 ~ 20270565 (+)
lrrc34 lrrc34 other downstream 13313 20274120 ~ 20281252 (+)
vipr2 vipr2,LOC107656837 other downstream 483942 20744749 ~ 20764373 (+)

Expression


Co-expression Network