mynn (mynn)


Basic Information

Item Value
gene id mynn
gene name mynn
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20261868 ~ 20270565 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397355
GTTTACATACTGACATCGAcgaagcaaaaaaataaataaaaaaagacgcAACTGGACGAGAGCTGaaactttgtttaatttaaattcgGGGAGAACGACGTTATCAAACGCTGTTTGAACAAATGGTACGTAATCGCTCTGTTTCGGAGGAGATTTTTCGGGAAGTTTGCGATAAATGTCGTTCTGTCAAAGTGGCGTTTGGCGACTGGACTAAACATCGAGAAGGAAATGGTCTACTTAAGAGGAAATACAGAGAGTGCATTAAACACAG
>XM_026937994.2
GCCGCCTGCAGGATGAACCAGGAAACATGGTTAAAGTCAGGAGACCTAAACCGGATATTACGTCACCTCAGCGAGCTTACTGGACTAGCCTAAAAATGGCCGACCATAACGAAGGATTTTAATCTACGCTTGTATTAATATCCGTCGTGTTCCACGCCATGGCCCGTGTCCCTCACGGCGAGTTCCTCCTGGAGCAGCTGAGGAAGCAGAGGGAGCGCGGTTTCCTGTGCGACTGCACCGTGATCATCGGCCAGGCTCGCTACGAAGCTCACCATAACGTCCTGGCGGCCTTCAGCGAGTATTTCTCCACGCAGTGCATCGATGCAGGACGAGAAGGTGCCACCGTTACACTGGACCCCGAGTGGGTTAACGGCGCCGTGTTCGAGAAACTGCTGGACTTCATGTACACGGGGAACTTAAACATGGACGGGGATGAAATTACAAACGTTCAAAACGCAGCGTCCTACCTTGGGATACAGGAAGTCCTGGCTCTCTGTTCCTCGAGTGCTGCCAGAGAAAGCCCTGCCGCTGCGACGGACGCGATCTTCACAGATCCTCGTTCTCCGCTCAGCCCGGACGACTACGAGCCACTGGAACCACTTGAGGAGGTGGAGGAAAGGGAGATGCtgaggaaggaggaagagaagagatcAGGAATGTTTCAGGAAAAAGCAGCTCCAGTTGAAGATTCCCAGTTTTCCAGCGAACAAACTCCACAAGGCACAGAGAAGAGGATCCGGAAGCCCAGGACTCGGCTTTACGAAGAGGAAGATGACTTCACGAAGAAGGAAAGCCCGCTTTCTCCGAGAGGACGAGGCCGAGGAAGGGGCAGGCCGAGAGGGAGGCCGAGGACGAGACCTCTGGATTCTGATAAAACGGATGCTGCGGCGATGGACAAGAGCCCGATTCCGGAGAGTGCTGTAGTCCGGAGAGGAACCGGAAGACCGAGAGGGCGTCCACGTACGAGACCGTTGTTATCTGAAGCCGTAGACTCGACCAGTGCTGAAGAAAACGCCACAGTGGTGAATGATGAAGAAACGGAAAGCGGGACAGTGCAGTCGGAACCGTCCGAGTCTGCAAATCCACAGGGAGACACAGAGGAGGCTAACGCAAACGACGTGGAAGTGGAAAACAAAGCGATGTCAGACGCTGAGAATCCTAAAGAGCCCGGAGTCATGAAACGAGGAAGGGGTCGACCGAGAACCAAGTCTCTGCCTTCAGAGAGCGCTGAAACCCCGAACCCCGAGGAGACGTTCACGCAGACGTTGCAGAAAGAAGTGCGTAAGAGAGGCAGGCCACGTTCCAAACCCCCGCCGTCGGAGATGCCTGAATCCGACAACACGGAAGGAGGAACGGAACAGGACGAGGGACCAGATCAGGAGAATAATCAGCCCAAAGCGTCCTCCTCTGAGCCCCTCCGCGGCCAACAGAAACCTCCGGAAAACTCCAAGAAGGTCCGGATGAGCACCAGGAAGCGGAGCCTGAGCCGGAAGCTGAGAGAGAGCCAAGCCAGCAACGACGAAAACGACCAGGACGAAGCGGCGGAGGAGGAAGGCAGCGAAGAGTGGGAGGAGGAAAAGGACGTCAAGGTGTCGCAAAACAAGCTGCGGCCCATCTGCAACATCTGCGGGAACCTGTTCTCGGAAATGAGCAGCCTGCGCAGACACATGCGCATACACAAGGGGCTTAAACCTTATCAGTGCCAGCTGTGTGGACGCTGCTTCAGGCAGGGAAACCAGCTCAAGACGCACCTGCGGATTCACACAGGTGAAAAGCCGTTCTCCTGCAGCCGCTGTGACACGTCCTTCGCGCAGAAATGTCAGTTGGTGTATCACTGCCGGATGCATCACGGGGAGGAAAAGCCTCACAAGTGTGACGTGTGTCCTGCAGCTTTCGCTACGTCCAGCAATCTCAAGATCCACATGAGGACGCACAGCGGGGAAAAGCCGTACGAATGCGGCGAATGCGGGAAGCGTTTCACTCAGGCGAGCACGCTGATGTACCACAAGCGCCGGCACACGGGGGAGAAGCCCTACGTCTGTGACACGTGCGGCATGGCCTTCGCCGTCTCCAGCTCCCTCATCTCACACACCAGGAAACACACGGGAGTGACTCCGTACATCTGCCTGGACTGTGGGAAACCCTGCTTAACATCTGGAGAGCTCAGGAAGCACATGGACATCCATAATGGTTCAAGAAGAGTGATCTGTAACATATGTGGAAATACGCTGTCTGATATTTACAGCCTAAAGAAGCACCGAGCTCTAAAACACAGCGcTCCTCCAGAGCAAGAAGAAGAACCTACGAAATCCGAATCCGTGGAGTGTCCGATCGAGTGCCAGCTCCCGATTGACCACCAGGGTCTGATAGCACGAGTGCGCTCCGTTCTATCGGAATCTCCAGAGCCAAGCTTCCCAGATGAATCCCCTCTCACATCTGAGGCTTCCATGATCATCCATCAGCCAGAAACGCCGATGATCATCCAACACTCTGAAGCTGCAGGAGCACCGATGATCATCCAGCATTCAGAAGCTTCAGGAACCCAAATGATCTCAGGATCCCCGATGATCATCCAACACGCCGAGTCCTCCGAGGCTCCGATGATCATCCAGCACTCGGAAGCTGGAGGAACGCCGATGATCATCCAGCACTCGGAAGCAGGAGGAACACCGATGATCATCCAGCATTCAGAAGGTTCAGGAACGCCGATGATCATCCAGCACTCGGAAGCTTCCGAGACGCCGCTGATCATCCAACACGCCGAATCCTCAGGAGCACAAATGATCTCAGGATCTCCGATGTTTATCCAACACGCAGATTCCTCCGAGACCCCCATGATCATCCAGCATTCAGACGCTACAGGATCACCAATGATCTTCCAGCATGACGAGTCCTCAGAAACCCCAGTGCTCATCCAGCACGGAGATTCCGGGGAGCAAGTGAGCTACGTTTTGGAGCAGTATGAAATTCCTGGTTCCTCAGACATTGAGCACGCTCAGATCGTCATCGTGCAGACTATCGATTAAGATGGCAGACATCTGGAGAACATCTGGTCTCCACGGCGTATCTGCTGCAGTACAGAGTAGTTTTAGAGTAGTTCTTGTCTTTGTAAGATGGAGACAatcttcagtgtgtttcagaaactgctgcacCAGGAGGTCATTTTTATggcgttttttttatttaagctttTCAGTATTGGAAAAACAAAGATCTCCTGATGATCATGTCCACGATGCTGTTCTTCTGCTCAGTGTGATTTTATAACTGTATGGATTAAACAGTTGCTTTGTATATAAAAGCATCTGATAACAAccacaaaatggaggaaatgcTTAAGTTAATATTTTGCTCTTAACATGATATTGTGTGATATTGCTACTAAATAGAATTATactccatttttgttttttgttgtttttttttttgtttgtttgtttgtttgtttttgggggaaaaaaacatgacaaatgatCAGTTGCCTGGTTTGGTGTTATTTTTCATAATGTaatttttctggatttttaaaaataatattgacTCTTAAGAACAAAAGACCAACATTATCGAcaaatttacttttaaatttactttGATGTCGATAGATTTGTTAATATCTgacgtttatttttattatgagaTATTTCAGCCTGATTACCACTAAACAAAATTCTAATCGCTTCTCTAGATGAAATCAGATTTTATTCACAGAGATGAAATTTTCGAGGTCAATATTTTCACCTCATATATCACAATATTGGCCTTTACTAAAGTTACAACATGCAAATGAACCTCCAACCAACCCATAAATATTccgttatataaataaaataaacgaTTCCGTGTTATGATCGTTACAAACCAGCGTAGTTCAATTTCAAgttcattttttgttaaataattttagttaaaataatGAAGGACAACTTAACCATGTCACATGAAGCGTTcgcaatttattttatttatcagagtTTGTCACAATTTTGTCTCTTCCAAggtgaaatgaaattttaaaaaaaaattgagaacaATGAAGAAAAACTCAAAATTACACTTGAGTTACCGTTTGTTCAAACGTTGTCACTGTTTCCGTGTAGAGCGAACAGGAACGGTTTATTTCCCGATTTCAGAGCTTCAGTTTAGAGTTGATGGTAAGTGTAATGAGTTTGAGTTTAAGCCCTATTCGGACGGGATTAGTTTTCAGAACATGTGTCTGTAAAGTGATTGTTACTGCGGACATCTGTGATGTTCAATTCTATGAATAATCGATTTCTGTAGAAATTGACgagatgggcgtgtcttcatTGTTTACATACTGACATCGAcgaagcaaaaaaataaataaaaaaagacgcAACTGGACGAGAGCTGaaactttgtttaatttaaattcgGGGAGAACGACGTTATCAAACGCTGTTTGAACAAATGGTACGTAATCGCTCTGTTTCGGAGGAGATTTTTCGGGAAGTTTGCGATAAATGTCGTTCTGTCAAAGTGGCGTTTGGCGACTGGACTAAACATCGAGAAGGAAATGGTCTACTTAAGAGGAAATACAGAGAGTGCATTAAACACAGCAGAAGAAGCAGCTCGGACTGTGGGCCGTGTCCGTCCTCGAGGACCTGGACGCCATGTTGGTGACAGACCCGGAGGAGGATCATGTGGACAACCTAAGCTCCGAGGATGAGCATCAGTCTGAAGATatacaggccacgcctccttcaggaAGACTGACAGGTAGAGGCCACGCCTCACCTCCAGATGTAGGAGGGTGTGACATCACAGACGAGTCACTGGAGTCACCTTTACTTCATGACCTTCTACACTGTCcccatgcagtgtgtgtgtgtgtgtgtgtgtgtgattcctgAGTGTGCGTTCacaagaacattttattatttgaaaaatgacGAGCTGATGGACGACatgcaacaaaacaaataaaagacaaaatggaATTTATATAAAGTGGAATAGGactataaagtgtgtgtgtgtgtgtgtg

Function

symbol description
mynn Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Is expressed in heart. Orthologous to human MYNN (myoneurin).

NR:

description
PREDICTED: myoneurin

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K24385 MYNN; myoneurin

RNA

RNA id representative length rna type GC content exon number start site end site
TU397355 False 271 lncRNA 0.39 1 20269555 20269825
XM_026937994.2 True 5008 mRNA 0.48 11 20261868 20270565

Neighbor

gene id symbol gene type direction distance location
LOC113541175 LOC108256633 coding upstream 1938 20254383 ~ 20259930 (+)
tmtopsb tmtopsb,LOC108256142,LOC108440411,LOC107586803,LOC107685448 coding upstream 32928 20216094 ~ 20228940 (+)
tnk2a LOC108256568,LOC108440396,LOC107685449,LOC107725874 coding upstream 54598 20194060 ~ 20207270 (+)
tfr1b NA coding upstream 73216 20173100 ~ 20188652 (+)
LOC113541177 NA coding upstream 94721 20164767 ~ 20167147 (+)
si:ch211-230g15.5 phc3 coding downstream 47163 20317728 ~ 20333594 (+)
cldn11b cldn11 coding downstream 64047 20334612 ~ 20339784 (+)
LOC117595803 ghsr,LOC107685461,LOC107586810,LOC107725860,LOC107721864 coding downstream 222767 20493332 ~ 20496346 (+)
LOC117595765 NA coding downstream 310015 20580580 ~ 20581545 (+)
larp4b larp4b coding downstream 322121 20592686 ~ 20612322 (+)
G335558 NA non-coding upstream 1061 20260571 ~ 20260807 (+)
G335383 NA non-coding upstream 53251 20207524 ~ 20208617 (+)
G335379 NA non-coding upstream 70079 20091823 ~ 20191789 (+)
G335381 NA non-coding upstream 72545 20174778 ~ 20189323 (+)
G335377 NA non-coding upstream 203046 20058374 ~ 20058822 (+)
G335563 eif5a2,eif5a,LOC107685442,LOC107590245,LOC107586748 non-coding downstream 15516 20286081 ~ 20371855 (+)
G335582 NA non-coding downstream 30021 20300586 ~ 20300899 (+)
G335564 NA non-coding downstream 93852 20364417 ~ 20366758 (+)
G335593 NA non-coding downstream 107842 20378407 ~ 20380717 (+)
G335619 NA non-coding downstream 153647 20424212 ~ 20425303 (+)
ccl20b NA other upstream 98762 20160267 ~ 20163106 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other upstream 273832 19985332 ~ 19988036 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other upstream 379032 19870381 ~ 19882836 (+)
G335231 NA other upstream 472810 19788583 ~ 19789058 (+)
cip2a kiaa1524 other upstream 558064 19636868 ~ 19703804 (+)
lrrc34 lrrc34 other downstream 3555 20274120 ~ 20281252 (+)
vipr2 vipr2,LOC107656837 other downstream 474184 20744749 ~ 20764373 (+)

Expression


Co-expression Network