G335563 (eif5a2,eif5a,LOC107685442,LOC107590245,LOC107586748)


Basic Information

Item Value
gene id G335563
gene name eif5a2,eif5a,LOC107685442,LOC107590245,LOC107586748
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20286081 ~ 20371855 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397360
CGTAAACACTCTACAACACGAGACGCGAACAGGCTTCAACACTTTATTTAAGGTCTGACAGCCGGAACCAGGCTGCTATTGCGTTACAGAGGTACTTGCACATGGCCATCACATCCTTCTGTCCACGTCACAATGGAGACCGGCGCTTATAAATTCCACTGAAGTTTATTTCTGTCTTAGtgattttactaaaaaaaaaaaaacaaacaaaaaaaaagtgtttcgaGTAGTACTCAAAGTACTCCAAGTACTACAAAGTGCTAACTACCAGGACACTTGCATCTCACTTTGGGTAAAGGCATCAACCGAGAGAGCTGACCTTAGTGCAGATACAGAACCAAccatgtttataaaaaaaaaaaacaaaggaaaaaaaagaaagttatgGCACCCTTAAGGCAGTGAGGGGAATAAAAATTGGTGAGTGTCAGCGAGGGCCGTTTCTTCCCCTTCTTTAAAACGCATTGTGCACATATTCCACTGAAAGGCATCAATTCTGCAaagtaatgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatctgtgtgtgtgtgagattttataCATATGGCAAATGGATCCCGTTTTAACACTCAGGAATGTAAGTGGCCTGACAAACATCATGAAGGCAAATCATAGtggaatgaaaaataataatctaaaagaacctaaaaataaatctgatctGTGAGAATGCCAaaacaacctaaaaaaaaaaaaaaaaaaaaaacacccagcaGAGTAACTGGAACGAGGAACAGGGattatttaaaaggaaaaaaaaaaacaccagaagaGTTGTGAGGTTGTGTGTGAAGGCCAGAGCTTTGGTGaagaaacaaaaccaaaaagcaGGAGATTTTAATGTGGTGCATGTTGCAGCCTGAGCagcccagtctctctctctctctctctctctctctctctctctctctctcgctcgcccGCGCTCTTCCTATTTGGTAAAGGCCTTGATGCCGACTGCGGCCTCTTCACCCATCGCTGAGAGCACGGTAATCATGTCTTCACCAGCGCCGTGTTTGGATTCGATCTCCTTGCCCAGGTCACCCTCAGGAACACGCAGGTCCTCGCGCACATCACCGTTGTCCATCATGAGAGACAGGAAGCCCTCGTTAATGTCCACCAGCTGACGGcgtgaaaacaaaaataaataaaaatcaggtTACATTCagtatgaattatttttgtgaAGAAACTAAACAGTTTGAT
>TU397361
taaaaaaaaaaaaaaaaaaaaatgtttcgaGTAGTACTCAAAGTACTCCAAGTACTACAAAGTGCTAACTACCAGGACACTTGCATCTCACTTTGGGTAAAGGCATCAACCGAGAGAGCTGACCTTAGTGCAGATACAGAACCAAccatgtttataaaaaaaaaaaacaaaggaaaaaaaagaaagttatgGCACCCTTAAGGCAGTGAGGGGAATAAAAATTGGTGAGTGTCAGCGAGGGCCGTTTCTTCCCCTTCTTTAAAACGCATTGTGCACATATTCCACTGAAAGGCATCAATTCTGCAaagtaatgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatctgtgtgtgtgtgagattttataCATATGGCAAATGGATCCCGTTTTAACACTCAGGAATGTAAGTGGCCTGACAAACATCATGAAGGCAAATCATAGtggaatgaaaaataataatctaaaagaacctaaaaataaatctgatctGTGAGAATGCCAaaacaacctaaaaaaaaaaaaaaaaaaaaaacacccagcaGAGTAACTGGAACGAGGAACAGGGattatttaaaaggaaaaaaaaaaacaccagaagaGTTGTGAGGTTGTGTGTGAAGGCCAGAGCTTTGGTGaagaaacaaaaccaaaaagcaGGAGATTTTAATGTGGTGCATGTTGCAGCCTGAGCagcccagtctctctctctctctctctctctctctctctctctctctctcgctcgcccGCGCTCTTCCTATTTGGTAAAGGCCTTGATGCCGACTGCGGCCTCTTCACCCATCGCTGAGAGCACGGTAATCATGTCTTCACCAGCGCCGTGTTTGGATTCGATCTCCTTGCCCAGGTCACCCTCAGGAACACGCAGGTCCTCGCGCACATCACCGTTGTCCATCATGAGAGACAGGAAGCCCTCGTTAATGTCCACCAGCTGACGGcgtgaaaaCTGGAAGTCGTTTCTCTTTATGTTGGGGACGTCCATGTTGTGGGTGGAGGGACAAATATCTTCATACTTCTTATTAGTGAAAATATCGATACCAACCAGGTGAACCTGCGCAGACGAGAGAACAGCATTTAACACTTAAAACTCGACACTTAAAACTCGACACTTAAAACTCGACACTTAAAACTCGACACTTAAAACTCGACACTTAAAACTCGACACTTAAAACTCGACACTTAAAACTCGACACTTAAAACTCGACACTTAAAACTCGACACAGAACAGAACGAGAGGGAAGTGAATCAGTGGGCTGAGAGagaatcaaataaaattcaattcaagaTTCACTGATGAATCAAAAACgcaatacagagagagagagacagacagacagagagagagagagacagagagagagagagagagagagagaga

Function

symbol description
eif5a Predicted to enable translation elongation factor activity. Predicted to be involved in positive regulation of translational elongation. Predicted to act upstream of or within several processes, including mRNA transport; positive regulation of translational termination; and translation. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be part of nuclear pore. Is expressed in endoderm; intestine; liver; pancreas; and swim bladder. Orthologous to several human genes including EIF5A (eukaryotic translation initiation factor 5A).
eif5a2 Predicted to enable translation elongation factor activity. Predicted to be involved in positive regulation of translational elongation. Predicted to act upstream of or within several processes, including mRNA transport; positive regulation of translational termination; and translational elongation. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be part of nuclear pore. Orthologous to human EIF5A2 (eukaryotic translation initiation factor 5A2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU397360 False 1232 lncRNA 0.42 2 20369122 20371056
TU397361 True 1400 lncRNA 0.42 4 20286081 20371855

Neighbor

gene id symbol gene type direction distance location
LOC113541175 LOC108256633 coding upstream 26151 20254383 ~ 20259930 (+)
tmtopsb tmtopsb,LOC108256142,LOC108440411,LOC107586803,LOC107685448 coding upstream 57141 20216094 ~ 20228940 (+)
tnk2a LOC108256568,LOC108440396,LOC107685449,LOC107725874 coding upstream 78811 20194060 ~ 20207270 (+)
tfr1b NA coding upstream 97429 20173100 ~ 20188652 (+)
LOC113541177 NA coding upstream 118934 20164767 ~ 20167147 (+)
LOC117595803 ghsr,LOC107685461,LOC107586810,LOC107725860,LOC107721864 coding downstream 121477 20493332 ~ 20496346 (+)
LOC117595765 NA coding downstream 208725 20580580 ~ 20581545 (+)
larp4b larp4b coding downstream 220831 20592686 ~ 20612322 (+)
dip2ca dip2c,LOC108261172 coding downstream 245889 20617744 ~ 20726105 (+)
LOC113525236 ufl1 coding downstream 639017 21010872 ~ 21024050 (+)
G335558 NA non-coding upstream 25274 20260571 ~ 20260807 (+)
G335383 NA non-coding upstream 77464 20207524 ~ 20208617 (+)
G335379 NA non-coding upstream 94292 20091823 ~ 20191789 (+)
G335381 NA non-coding upstream 96758 20174778 ~ 20189323 (+)
G335377 NA non-coding upstream 227259 20058374 ~ 20058822 (+)
G335593 NA non-coding downstream 6552 20378407 ~ 20380717 (+)
G335619 NA non-coding downstream 52357 20424212 ~ 20425303 (+)
G335681 NA non-coding downstream 157891 20529746 ~ 20530208 (+)
G335689 stag1,stag1b,LOC108434968,LOC107721913,LOC107590250 non-coding downstream 192795 20564650 ~ 20565744 (+)
G335705 NA non-coding downstream 242539 20614394 ~ 20614624 (+)
lrrc34 lrrc34 other upstream 4829 20274120 ~ 20281252 (+)
mynn mynn other upstream 15516 20261868 ~ 20270565 (+)
ccl20b NA other upstream 122975 20160267 ~ 20163106 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other upstream 298045 19985332 ~ 19988036 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other upstream 403245 19870381 ~ 19882836 (+)
vipr2 vipr2,LOC107656837 other downstream 372894 20744749 ~ 20764373 (+)

Expression


Co-expression Network