G335582


Basic Information

Item Value
gene id G335582
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20300586 ~ 20300899 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397381
CTTTGCCACATGAGGTCGAGGTGTCTGGGATCCTCCTTCAGGTTGGTGAGGAGACACGGGTCAAACACGTACGCCGGGAACTCCGCCGCCGccTTTCCCTCTGAACCGCTCTCACACGCTTTCTCTTTCCCAGAACACAGATTTAACCCCTCCTCCACTCGCACAGTCTCctagagaacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU397381 True 205 lncRNA 0.56 2 20300586 20300899

Neighbor

gene id symbol gene type direction distance location
LOC113541175 LOC108256633 coding upstream 40656 20254383 ~ 20259930 (+)
tmtopsb tmtopsb,LOC108256142,LOC108440411,LOC107586803,LOC107685448 coding upstream 71646 20216094 ~ 20228940 (+)
tnk2a LOC108256568,LOC108440396,LOC107685449,LOC107725874 coding upstream 93316 20194060 ~ 20207270 (+)
tfr1b NA coding upstream 111934 20173100 ~ 20188652 (+)
LOC113541177 NA coding upstream 133439 20164767 ~ 20167147 (+)
si:ch211-230g15.5 phc3 coding downstream 16829 20317728 ~ 20333594 (+)
cldn11b cldn11 coding downstream 33713 20334612 ~ 20339784 (+)
LOC117595803 ghsr,LOC107685461,LOC107586810,LOC107725860,LOC107721864 coding downstream 192433 20493332 ~ 20496346 (+)
LOC117595765 NA coding downstream 279681 20580580 ~ 20581545 (+)
larp4b larp4b coding downstream 291787 20592686 ~ 20612322 (+)
G335558 NA non-coding upstream 39779 20260571 ~ 20260807 (+)
G335383 NA non-coding upstream 91969 20207524 ~ 20208617 (+)
G335379 NA non-coding upstream 108797 20091823 ~ 20191789 (+)
G335381 NA non-coding upstream 111263 20174778 ~ 20189323 (+)
G335377 NA non-coding upstream 241764 20058374 ~ 20058822 (+)
G335564 NA non-coding downstream 63518 20364417 ~ 20366758 (+)
G335593 NA non-coding downstream 77508 20378407 ~ 20380717 (+)
G335619 NA non-coding downstream 123313 20424212 ~ 20425303 (+)
G335681 NA non-coding downstream 228847 20529746 ~ 20530208 (+)
G335689 stag1,stag1b,LOC108434968,LOC107721913,LOC107590250 non-coding downstream 263751 20564650 ~ 20565744 (+)
lrrc34 lrrc34 other upstream 19334 20274120 ~ 20281252 (+)
mynn mynn other upstream 30021 20261868 ~ 20270565 (+)
ccl20b NA other upstream 137480 20160267 ~ 20163106 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other upstream 312550 19985332 ~ 19988036 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other upstream 417750 19870381 ~ 19882836 (+)
vipr2 vipr2,LOC107656837 other downstream 443850 20744749 ~ 20764373 (+)

Expression


Co-expression Network