G335593


Basic Information

Item Value
gene id G335593
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20378407 ~ 20380717 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397392
GcgattaattaaattaaaattaagacaAAAGTGAGATGAAAAAGTGAAACATGAACTtctatgaataataaaaaatgagacGTTTTAATGTCAGATCACAGTTTTATGTTCATGTGAAAGTAAAACTGAAGGTGAAATCCCAAATGTACAGGTACAGacatgcagaaacacacacacacacacacacacacacacacatttatggtttatttatgaaatataacGGGTTGTGTAGGTGTAATATTCTGCTCCAGATAGCGCCTGTAACTGgacctgaaaataaaattgcCCTCTAATCAGTTTcttcacacttttacacactttttcatGCTCGCTGCAGCTTTTCCTCCTGATTCTATTTGACCTTTTgcacttctttctcttttcctcctgtTGACAGTTTTCACATCCGGGTCACGGCACCAACAACTCGATAATTCTCAGTAGATTTTTTGTCTGAATTCATACCCAGTTTGCGTTCTGTCACTGGAAACTAATATATTTtctgtgagaaaatgtgaaCATCACCCTGATACCAAAAgcaactaataataaatattaaattttttacattgtttCATGCTTTAAAGCCCTTGTTTCAACTTTGCAGTAAACAACTAATGCttactttttatactttttatacttttggCACTGGTTTTTACTCTGCTTTAGTTAAAAGGGTCGTCTAATTCCACAAttaaccgttttttttttttgactcttaaatcttaaaatgtGATTGCAAGTGGATTTTTATGATGCTGCAGAAATTTAAGAGAATCCAAGTTTCACGTgtattgttaaaatatataaagcctTTGATCTTCaactttactgtatttattgatctttattttcaatatttgaGATGAAGCAAAAAGAATCGCTTTCTTTTATGTGCCTTTTAATTCAAGCCCTgtctgaattattattttattaataattacgtGACGTCATGAGtgaatataaacttgtgatcgAATGACTGGAGGAAAGAAATGAGGTAGGTTTAGAGGAAGCTCAATGCACCAAACTCATTCCTTTGTTGTCACGCaatctgagaaaaaaacaaatcacatcTGCGTTGCGTGACCAATTTTATTAaaggattatttaaaaaaaaacctcaaatacACCTCTAACACAGCTCTGAAAGTCACAGCTTCAGACTGGCGGAACGCTGTTCAGGTTTGAGCTAAAACCCCGTCCACCCACACACCGAAACGATATCTCATGGTCTTTATTGCACTTAAGCAACGACATCCAAAAAGCTAAAATCCATCATAGGGATCGTTATGAAATTATGAGAAACGGAGCTTTATCTTCCAGAATGATTTCCCAAAATTCTGCTGTAACGTACTGTATAAAACATCCACACATCCGGACTTGTCTTAACTATTGTGTGATGTTTTTCGTATTGACGGATAATgcggagacacacacacacacacacacagaaatacactaAGAACATACAAACAATACATAAACCTTTGTACAGTTACAGTGTGATGAAATGCAGTAACATAAAGTGATCAAATAAATTcatgaaagacacacacacacacacacacacacacacagacctctcCACAGAATTGTTTTGTCCAACCAACAGCAATAAATTATTGTGTTGAAAGTGTCTAAACAGTTACAATATCATGTATTTTCTTGATTTTCGGCCGTCTCAGTTAGCAGTTCTGTCCGTCTCTGCTCTCCTCCAAAAATCCGTTAGTCAGATAAAAACGAGAACCCCACAGGTAAGAGCCGTAAGGAATTCTGGGTACAGGAGGTGGTTGTTCTTCTCTCGGCGGTCGGAGCTTCGTGTGGATGTGAGATGAACTTCGGCTCTCTGGAGCGGCTCCCggcctttattttattttatttatttattttctaaaagtaTTTACTCTCAAAAGCGGCCCTGCGGTTCCACACACTGTGGGTTCTTCTCGTTCCCTCCCACCCCATCATTTTAGAAAAACAGAATACGTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU397392 True 2000 lncRNA 0.37 2 20378407 20380717

Neighbor

gene id symbol gene type direction distance location
cldn11b cldn11 coding upstream 38623 20334612 ~ 20339784 (+)
si:ch211-230g15.5 phc3 coding upstream 44813 20317728 ~ 20333594 (+)
LOC113541175 LOC108256633 coding upstream 118477 20254383 ~ 20259930 (+)
tmtopsb tmtopsb,LOC108256142,LOC108440411,LOC107586803,LOC107685448 coding upstream 149467 20216094 ~ 20228940 (+)
tnk2a LOC108256568,LOC108440396,LOC107685449,LOC107725874 coding upstream 171137 20194060 ~ 20207270 (+)
LOC117595803 ghsr,LOC107685461,LOC107586810,LOC107725860,LOC107721864 coding downstream 112615 20493332 ~ 20496346 (+)
LOC117595765 NA coding downstream 199863 20580580 ~ 20581545 (+)
larp4b larp4b coding downstream 211969 20592686 ~ 20612322 (+)
dip2ca dip2c,LOC108261172 coding downstream 237027 20617744 ~ 20726105 (+)
LOC113525236 ufl1 coding downstream 630155 21010872 ~ 21024050 (+)
G335563 eif5a2,eif5a,LOC107685442,LOC107590245,LOC107586748 non-coding upstream 6552 20286081 ~ 20371855 (+)
G335564 NA non-coding upstream 11649 20364417 ~ 20366758 (+)
G335582 NA non-coding upstream 77508 20300586 ~ 20300899 (+)
G335558 NA non-coding upstream 117600 20260571 ~ 20260807 (+)
G335383 NA non-coding upstream 169790 20207524 ~ 20208617 (+)
G335619 NA non-coding downstream 43495 20424212 ~ 20425303 (+)
G335681 NA non-coding downstream 149029 20529746 ~ 20530208 (+)
G335689 stag1,stag1b,LOC108434968,LOC107721913,LOC107590250 non-coding downstream 183933 20564650 ~ 20565744 (+)
G335705 NA non-coding downstream 233677 20614394 ~ 20614624 (+)
G335706 NA non-coding downstream 238798 20619515 ~ 20623151 (+)
lrrc34 lrrc34 other upstream 97155 20274120 ~ 20281252 (+)
mynn mynn other upstream 107842 20261868 ~ 20270565 (+)
ccl20b NA other upstream 215301 20160267 ~ 20163106 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other upstream 390371 19985332 ~ 19988036 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other upstream 495571 19870381 ~ 19882836 (+)
vipr2 vipr2,LOC107656837 other downstream 364032 20744749 ~ 20764373 (+)

Expression


Co-expression Network