cops9


Basic Information

Item Value
gene id cops9
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20242488 ~ 20246311 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397559
CCGGAAGTTGCTGTACTAGCCTAGCTTGGTGCGCCGCTTTTAAAGCTGTCGTTGGCTGGTTTTTAAGCACTCATTCCGCAGACATGAAGCCGGCTGTGGATGAAATGTTCCCGGAAGGAGCCGGACCGTATGTGGATCTGGATGAGgcaggGGGCAGTACCGGGCTGCTGATGGATTTGGCTGCTAATGAGAAAGCTGTGCACTCCGACTTCTTCAACGattttGAAGACCTCTTCGATGACGATGACATCCAGTGATGAAGATTTGCACTTTTCAATCGTGAAACTTGTACTTGTTGTGTCTTGTCGTGACTTTTTCCTCATCTGTACAAAGTCGAGTTTATGATGTTGGGTTTATTTTGTtgtcaat
>XM_026938022.2
GTTTCCAGTCGGCTGTATTTAAATGTGACACCACCGGAAGTTGCTGTACTAGCCTAGCTTGGTGCGCCGCTTTTAAAGCTGTCGTTGGCTGGTTTTTAAGCACTCATTCCGCAGACATGAAGCCGGCTGTGGATGAAATGTTCCCGGAAGGAGCCGGACCGTATGTGGATCTGGATGAGgcaggGGGCAGTACCGGGCTGCTGATGGATTTGGCTGCTAATGAGAAAGCTGTGCACTCCGACTTCTTCAACGattttGAAGACCTCTTCGATGACGATGACATCCAGTGATGAAGATTTGCACTTTTCAATCGTGAAACTTGTACTTGTTGTGTCTTGTCGTGACTTTTTCCTCATCTGTACAAAGTCGAGTTTATGATGTTGGGTTTATTTTGTtgtcaataaaacatttttgtgaaaaatgaataagcATGA

Function

NR:

description
PREDICTED: myeloma-overexpressed gene 2 protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU397559 False 369 TUCP 0.47 3 20242520 20246278
XM_026938022.2 True 434 mRNA 0.45 3 20242488 20246311

Neighbor

gene id symbol gene type direction distance location
and1 LOC108256149 coding downstream 2108 20234786 ~ 20240380 (-)
klhl24b LOC108256314,LOC107671351,LOC107586738,LOC107721905,LOC107663692,LOC107590230,LOC103026629,LOC108443641 coding downstream 195319 20026736 ~ 20047169 (-)
chrnd chrnd coding downstream 255440 19972742 ~ 19987048 (-)
mbtps2 mbtps2,LOC107721932,LOC107590223,LOC107586733 coding downstream 375673 19859221 ~ 19866815 (-)
phex phex,LOC107705273,LOC107671358 coding downstream 393993 19832010 ~ 19848495 (-)
apodb LOC108256634,LOC103031628 coding upstream 3146 20249457 ~ 20252001 (-)
lrrc31 lrrc31 coding upstream 35300 20281611 ~ 20293054 (-)
skilb LOC108256440 coding upstream 49632 20295943 ~ 20309042 (-)
slc7a14b slc7a14,slc7a14b,LOC107586809,LOC107721826,LOC107685444 coding upstream 94578 20340889 ~ 20356019 (-)
LOC113541302 NA coding upstream 115282 20361593 ~ 20363736 (-)
G335498 NA non-coding downstream 48107 20121516 ~ 20194381 (-)
LOC113541188 NA non-coding downstream 69564 20167317 ~ 20172924 (-)
G335460 NA non-coding downstream 181329 20060024 ~ 20061159 (-)
G335404 NA non-coding downstream 340152 19879892 ~ 19902336 (-)
G335232 NA non-coding downstream 453430 19788583 ~ 19789058 (-)
G335800 NA non-coding upstream 414317 20660628 ~ 20661829 (-)
G335831 NA non-coding upstream 498248 20744559 ~ 20745016 (-)
G335859 NA non-coding upstream 676596 20922907 ~ 21002111 (-)
G335868 NA non-coding upstream 770635 21016946 ~ 21018572 (-)
G335865 NA non-coding upstream 776646 21022957 ~ 21024079 (-)
G335523 NA other downstream 60076 20179412 ~ 20182412 (-)
cnksr2a cnksr2,cnksr2a other downstream 274684 19889039 ~ 19967804 (-)
G335165 amer2 other downstream 638795 19600727 ~ 19603693 (-)
nup58 nup58,LOC107721897,LOC107590217 other downstream 663457 19555141 ~ 19579031 (-)
pdk3a pdk3,pdk3a,LOC107586717,LOC107705263,LOC107656160,LOC107663620,LOC107590342,LOC107721912 other downstream 721157 19507088 ~ 19521331 (-)
otos otos,LOC108440409 other upstream 140 20246451 ~ 20248461 (-)
fndc3bb fndc3b,fndc3bb,LOC108434945 other upstream 250777 20497088 ~ 20557959 (-)
stag1b stag1,stag1b,LOC108434968,LOC107590250 other upstream 313779 20560090 ~ 20591616 (-)
G335788 larp4b other upstream 363921 20610232 ~ 20612309 (-)

Expression


Co-expression Network