otos (otos,LOC108440409)


Basic Information

Item Value
gene id otos
gene name otos,LOC108440409
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20246451 ~ 20248461 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397560
acacacacacacaccattcaggAACACTGAACATTTCCAGCAGCTTCCAGCAGCTCAGATTAATAAACggaaaaacacattaaagcagggaaAGATGAAGTGGTGTGTCCTATTTTGCACTTTCTTCATGTGTTTTTTCGCGAACCATCTCAGTGgggcTCGAGTTATTCCTGAAGGAGTTCCCTATGATGAGCCGCCAGCTAGACCCTACTGGCCGTACTCCACCTCTGATTTCTGGAACTACATCGAGTACTTTCGTAGTATCGGAGACTACAACCGGATCAACGAGATGGCCAGGGCCTTCTTTGCCCACCAGAACCTCGGTGACACTTTGGGATATGAAGTGGCTGAGCAGTATGAGCGCTAAACAGACAATCAGACTTCTCTCTGCATGAGGACTTACTGAATAATGACTGAATAATGACAGATATGAATAgcttcttttcctgttttttttttaaaagttaataatCAAATGTTAACCTTAAAGTTTTAAACATTAGATAGGCTTTGATGTGTGTTAATTTTAatctataaaatgtaaaattatttctgttatGCTTGTAACAAGTCATGTATTAAACACTATAGTCGTCTATTCT
>XM_026938017.2
cacacacacacaccattcaggAACACTGAACATTTCCAGCAGCTTCCAGCAGCTCAGATTAATAAACggaaaaacacattaaagcagggaaAGATGAAGTGGTGTGTCCTATTTTGCACTTTCTTCATGTGTTTTTTCGCGAACCATCTCAGTGgggcTCGAGTTATTCCTGAAGGAGTTCCCTATGATGAGCCGCCAGCTAGACCCTACTGGCCGTACTCCACCTCTGATTTCTGGAACTACATCGAGTACTTTCGTAGTATCGGAGACTACAACCGGATCAACGAGATGGCCAGGGCCTTCTTTGCCCACCAGAACCTCGGTGACACTTTGGGATATGAAGTGGCTGAGCAGTATGAGCGCTAAACAGACAATCAGACTTCTCTCTGCATGAGGACTTACTGAATAATGACTGAATAATGACAGATATGAATAgcttcttttcctgttttttttttaaaagttaataatCAAATGTTAACCTTAAAGTTTTAAACATTAGATAGGCTTTGATGTGTGTTAATTTTAatctataaaatgtaaaattatttctgttatGCTTGTAACAAGTCATGTATTAAACACTATAGTCGTCTATTCTTCATAACTACATTAAATACTTGTCTTATGTACGTTAAACTCTTGTTTTTGTTGGAGTTAATCATTTTGCAGATAAAGttgtttatgcaaattattgcaaaatgaataaataaata

Function

symbol description
otos Predicted to be involved in sensory perception of sound. Is expressed in digestive system; gill; inner ear; and swim bladder. Orthologous to human OTOS (otospiralin).

NR:

description
otospiralin-like

GO:

id name namespace
GO:0007605 sensory perception of sound biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU397560 False 602 TUCP 0.40 4 20246566 20248461
XM_026938017.2 True 716 mRNA 0.37 4 20246451 20248460

Neighbor

gene id symbol gene type direction distance location
and1 LOC108256149 coding downstream 6071 20234786 ~ 20240380 (-)
klhl24b LOC108256314,LOC107671351,LOC107586738,LOC107721905,LOC107663692,LOC107590230,LOC103026629,LOC108443641 coding downstream 199282 20026736 ~ 20047169 (-)
chrnd chrnd coding downstream 259403 19972742 ~ 19987048 (-)
mbtps2 mbtps2,LOC107721932,LOC107590223,LOC107586733 coding downstream 379636 19859221 ~ 19866815 (-)
phex phex,LOC107705273,LOC107671358 coding downstream 397956 19832010 ~ 19848495 (-)
apodb LOC108256634,LOC103031628 coding upstream 996 20249457 ~ 20252001 (-)
lrrc31 lrrc31 coding upstream 33150 20281611 ~ 20293054 (-)
skilb LOC108256440 coding upstream 47482 20295943 ~ 20309042 (-)
slc7a14b slc7a14,slc7a14b,LOC107586809,LOC107721826,LOC107685444 coding upstream 92428 20340889 ~ 20356019 (-)
LOC113541302 NA coding upstream 113132 20361593 ~ 20363736 (-)
G335498 NA non-coding downstream 52070 20121516 ~ 20194381 (-)
LOC113541188 NA non-coding downstream 73527 20167317 ~ 20172924 (-)
G335460 NA non-coding downstream 185292 20060024 ~ 20061159 (-)
G335404 NA non-coding downstream 344115 19879892 ~ 19902336 (-)
G335232 NA non-coding downstream 457393 19788583 ~ 19789058 (-)
G335800 NA non-coding upstream 412167 20660628 ~ 20661829 (-)
G335831 NA non-coding upstream 496098 20744559 ~ 20745016 (-)
G335859 NA non-coding upstream 674446 20922907 ~ 21002111 (-)
G335868 NA non-coding upstream 768485 21016946 ~ 21018572 (-)
G335865 NA non-coding upstream 774496 21022957 ~ 21024079 (-)
cops9 NA other downstream 140 20242488 ~ 20246311 (-)
G335523 NA other downstream 64039 20179412 ~ 20182412 (-)
cnksr2a cnksr2,cnksr2a other downstream 278647 19889039 ~ 19967804 (-)
G335165 amer2 other downstream 642758 19600727 ~ 19603693 (-)
nup58 nup58,LOC107721897,LOC107590217 other downstream 667420 19555141 ~ 19579031 (-)
fndc3bb fndc3b,fndc3bb,LOC108434945 other upstream 248627 20497088 ~ 20557959 (-)
stag1b stag1,stag1b,LOC108434968,LOC107590250 other upstream 311629 20560090 ~ 20591616 (-)
G335788 larp4b other upstream 361771 20610232 ~ 20612309 (-)

Expression


Co-expression Network