Fish Transcriptome and Expression Database

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economic fish

G335859

Basic Information

Item	Value
gene id	G335859
gene name	NA
gene type	non-coding
species	striped catfish (Pangasianodon hypophthalmus)
category of species	economic fish

Chromosome Information

Item	Value
chromosome id	NC_047616.1
NCBI id	CM018562.1
chromosome length	21037487
location	20922907 ~ 21002111 (-)
genome version	GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397718
gggtctgcagaggtttgtagaggtttgatagggtctgtagaggtttgtagaagtttgatagtgtctgtagatgtttgatagggtctgtagagctttgtatatgtttgatagggtctgtagaggtttgatagggtctgcaggggtttgatagggtctgtagaggtttgtagaggattgatagggtctgtagaggtttgatagggtctgtagaggtttgatagggtctgtaatgGTTTGAt

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU397718	True	239	lncRNA	0.43	3	20922907	21002111

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
zmynd11	zmynd11	coding	downstream	182028	20726533 ~ 20740879 (-)
pld1b	pld1b,LOC108256388,LOC108413108,LOC107663701,LOC107685440,LOC107586751,LOC107721916	coding	downstream	434763	20445239 ~ 20488144 (-)
tnikb	tnik,tnikb,LOC103024681,LOC107685441,LOC106578374,LOC108440401,LOC107721871,LOC107725857,LOC103377179	coding	downstream	485076	20376679 ~ 20437831 (-)
eif5a	eif5a2,eif5a,LOC107590245,LOC107685442,LOC107586748	coding	downstream	547858	20369151 ~ 20375049 (-)
rpl22l1	rpl22l1,LOC102776745	coding	downstream	556266	20364456 ~ 20366641 (-)
LOC117595766	NA	coding	upstream	9387	21011498 ~ 21013434 (-)
G335831	NA	non-coding	downstream	177891	20744559 ~ 20745016 (-)
G335800	NA	non-coding	downstream	261078	20660628 ~ 20661829 (-)
G335498	NA	non-coding	downstream	728526	20121516 ~ 20194381 (-)
LOC113541188	NA	non-coding	downstream	749983	20167317 ~ 20172924 (-)
G335460	NA	non-coding	downstream	861748	20060024 ~ 20061159 (-)
G335868	NA	non-coding	upstream	14835	21016946 ~ 21018572 (-)
G335865	NA	non-coding	upstream	20846	21022957 ~ 21024079 (-)
G335867	NA	non-coding	upstream	22230	21024341 ~ 21024574 (-)
G335788	larp4b	other	downstream	310598	20610232 ~ 20612309 (-)
stag1b	stag1,stag1b,LOC108434968,LOC107590250	other	downstream	331291	20560090 ~ 20591616 (-)
fndc3bb	fndc3b,fndc3bb,LOC108434945	other	downstream	364948	20497088 ~ 20557959 (-)
otos	otos,LOC108440409	other	downstream	674446	20246451 ~ 20248461 (-)
cops9	NA	other	downstream	676596	20242488 ~ 20246311 (-)

Expression

Co-expression Network