Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

economic fish

G335867

Basic Information

Item	Value
gene id	G335867
gene name	NA
gene type	non-coding
species	striped catfish (Pangasianodon hypophthalmus)
category of species	economic fish

Chromosome Information

Item	Value
chromosome id	NC_047616.1
NCBI id	CM018562.1
chromosome length	21037487
location	21024341 ~ 21024574 (-)
genome version	GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397729
tggcatcacgAGTAAGGATTATCTAGAAAGCTGGAGGAACAACTGAGTCCCTTTACCCTAGGTGCATATAAACGTTTGGCCTTAACTGTATAATATAAGGTGTGAATCGTATTGACTGAACGTGGGAaaggggaagtggtagctcagtggttagaTGTTGGatttctgatcggaaggttgagagttaaaatcccagtactgccaagctgccactgctggtcccttgagcaaggc

Function

NR:

description
PREDICTED: nucleus accumbens-associated protein 1

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU397729	True	234	lncRNA	0.46	1	21024341	21024574

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
LOC117595766	NA	coding	downstream	10907	21011498 ~ 21013434 (-)
zmynd11	zmynd11	coding	downstream	283462	20726533 ~ 20740879 (-)
pld1b	pld1b,LOC108256388,LOC108413108,LOC107663701,LOC107685440,LOC107586751,LOC107721916	coding	downstream	536197	20445239 ~ 20488144 (-)
tnikb	tnik,tnikb,LOC103024681,LOC107685441,LOC106578374,LOC108440401,LOC107721871,LOC107725857,LOC103377179	coding	downstream	586510	20376679 ~ 20437831 (-)
eif5a	eif5a2,eif5a,LOC107590245,LOC107685442,LOC107586748	coding	downstream	649292	20369151 ~ 20375049 (-)
G335865	NA	non-coding	downstream	262	21022957 ~ 21024079 (-)
G335868	NA	non-coding	downstream	5769	21016946 ~ 21018572 (-)
G335859	NA	non-coding	downstream	22230	20922907 ~ 21002111 (-)
G335831	NA	non-coding	downstream	279325	20744559 ~ 20745016 (-)
G335800	NA	non-coding	downstream	362512	20660628 ~ 20661829 (-)
G335788	larp4b	other	downstream	412032	20610232 ~ 20612309 (-)
stag1b	stag1,stag1b,LOC108434968,LOC107590250	other	downstream	432725	20560090 ~ 20591616 (-)
fndc3bb	fndc3b,fndc3bb,LOC108434945	other	downstream	466382	20497088 ~ 20557959 (-)
otos	otos,LOC108440409	other	downstream	775880	20246451 ~ 20248461 (-)
cops9	NA	other	downstream	778030	20242488 ~ 20246311 (-)

Expression

Co-expression Network