pkdc (LOC108256330)


Basic Information

Item Value
gene id pkdc
gene name LOC108256330
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 397032 ~ 400945 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911134.2
GAGATCACGACAGGAAGCAGCGGGGATGCAGAATATGACAGAAGCGCACGATAGGACGCAACACCGGAAGTTTTTCCTGCATTCATTCAATGTCATTTCTTTATGCGCTTCACGTCTGTGAGCGTTTATAACAGCTTTATGAAGCCGTGTTTCCCATCAGGATGAAGCAGGAATATCGGGATCTGATCCTCCAGGCCACGTCGGCGGAGCGTCTGCGTGTCGGCTGTGAGATCCAGACTCTGTGGAGCGGTTACGGTCGGATCGTGCGAGTTCACCTGGAGGGCTGCGAGCGTTCCTCAGTCGTCGTCAAACACGTCATGTTTCCTAAAGAGTCCCGGGACGCTGACGTGTCTCACCGCCGCAAGGTCCGGTCCTATCAGGTGGAGACGCACTGGTACAAAAACTACAGCTCTAACGAGCGCTGCCGTATCCCAGCATGCCTTGCGGCGCAGTCGTTCGGCGAGGAGCAGCTGATGGTGCTGGAGGATCTGGACGCCGCCGGCTTCCCGGGCAGGAGGACGAGCGTGAGGGACGGCGAGATTAAAGCCTGTCTGCGCTGGCTCGCTAACTTCCACGGGCTTTTCCTCGGAGTCCCTGCGCGCGGCCTGTGGCCCGTCGGAACGTACTGGCACTTAGAGACGCGTCCCGATGAGCTGGAGGCCATGACGGACCTGAAGCTGAAAGCAGCCGCTCCGGAGATCGACGCCGTCCTGAACAGCTGCCGCTTCAAAACCATCTTACACGGAGACGCCAAACTGGCCAACTTCTGCTTCTCTAAGGACGGCTCCCGCGTGGCCGCCGTCGACTTCCAGTACGTGGGCGGCGGCTGCGGCATGAAGGACGTCATCTACCTCCTGGGGAGCTGCCTGGATGAGCGCGAGTGCGAGAAAAGAGCTCCTGATTATCTGGACTTTTATTTTTCCGAGCTGAAAGGCGCAGTGccggagaaggagaagaagaacttCTCCGAGCTGGAGGACGAGTGGAGACGCATGTTCGCCTTCGCGTGGACCGATTTTCACCGCTTCCTCCTTGGCTGGATGCCCGGACACCACAAGATCAACCGCTACAGCAAGCGGCTCACACAGGAAGTGCTgaagagactgacagagagatcAGACGGAGCGAAACACTGACTCCAGTCAGACTCGCACAAGACTCGCATCAGACTCGCGTCAGACTCGCATTAGACTCACTTCAGACTCGCACAAGACTCGCATCAGACTCACATTAGACTCACATCAGACTCGTACCAGACTCGCATCAGACTCACATTAGACTCGCATCAGACTCACATTAGACTCACATCAAACTCGCATTAGACTCACTTCAGACTCGCATCAGACTCACATTCAGACTCGCATCAGACTCACATCAGACTCGCATCAGACTCACATCAGACTCGCATCAGACTCGCGTCAGACTTGCATTAGACTCACTTCAGACTCGCATTAGACTCACATCAGACTCGTACCAGACTCACATTAGACTCACATCAGACTCACATCAGACTCGCATCAGACCTAACATCTCATCACTTATCAAACGCTGTTATTACACGgtgcgttctgattggctgagagtcaGGGTGAGGGGCGTGGTCTACACTGATCTGTTAGGAAGCCTTTACTCCAAACGGCTCCTTGATAATAAACACgttattacattataaacacattattatataataaacacGTTATTAAACAGAGCGACTGAGGGACTTTTCACGTCTGTAGATAAACAATGCTGCTGTAGGTCACGTTTGAGTTTGTGgcgtattaatattattttttatatttaataataataataataataattaaaggaGTACAGCAGCGAGCTCTCAGACTTCGGCTCTGTGTGTTCGCTCGTCAGTAACTCGGCTCAGTCCGTTCCTGTGTACAcgagcaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgttgaagTGCACTGATGACAGATCGGGACTCTTCAGTGTTCTCCATCAGCGTGGCTTCTCTTCTGcctctcatggtttcttcctcgtctcgtctcgtctcgtctcaGTGAGATGTTTTTCTCAGTGAGATGTTTTTCTCGTCTCTGGACTGAGATCTGCAGCCGctttcctgtaaagctgcttcgtgaTGATGTCTGATGTGTGTCGCTTCAGGCACTAAAGGAATAAACTGGAATAGAGCTGCTGTTTCACACACCGTCATCTCTGTGTCCCTGAGGCTCTGTGTAAAGCTCCGTCAGCTCGGGGTTTTACAGGAGCTCACGTCCAGACAAAGCTGAAATTCAGAGAGCGTCATTTCTCACACAGCCgctaaattctaaataaataataaagattttcattttattaaagagGAAAGTGAGTCAGTGTTTATTCACTAATGCGCAGAAACTTTAACCTGATAACaaatcagaattaaaataaCTTCACCGGTTCACACGTCCTCACCGTGTCACCGCAggagccctgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtaacgTGAGAGTGAAACGGGATTAAACGTCCTGCAGTGTGCAATAAAGCTGTTAAGAGTCTAAGCTCACCTCTAACCCAATGTTCCACACGGGAAAAACACAAATCTACTACataatacagcacacacacacacacacacacacatttctgacgCACACTCACACCTCCAGATTGTGGAAAACTTTTGAGTCAGCAGCACAAAATATTGAACCTGAGCTCACACACAACATGATACGACCTACAAgcacaatatattattataattgctctatttttattctaatttttacacttttattttaaaatgttacatgttTCTGTCacttctgttatttatttcattattattattggtttatttcaatatttttttttgacaatcttttgttttttatttctgttttttttacgTCACACTGTAAAGCACCAAGCTGCAGtttaaatggatgaaaatggctataaaataaagattattattattattattattattattattgttattattatttaaatggtgTGGTGTAAAGAGTGTATTTGAGACTGAACACTAACAAACACCAGAGTTTGGACTGAATtcagacatttaaaatttacaataaaaactAAAGGATAACGGACAAAAACATCCTAAAGGATTATTTGGTTTGTCCCAGTGACAGAACCCTTAAGTTCTCTGTAGAACCCTGTAGAACCCTGCAGCAGTGTTTCCTCTGCACAGGGTTTCACAcagaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaaggatCTTCAGCATCAGCACTGCATGAAGTCTTCCTTCATCCTTCTCTTCATTCCTGTGATCCTCTCCACACGCACACAGTGCCATAAATCTGGGAATAATATAACGTGAtctgtgaaaaatatttatcatggatcctttttctcttttaaaggaaaaattaa
>XM_034297797.1
TCCGAATCATCCAATGAGATCACGACAGGAAGCAGCGGGGATGCAGAATATGACAGAAGCGCACGATAGGACGCAACACCGGAAGTTTTTCCTGCATTCATTCAATGTCATTTCTTTATGCGCTTCACGTCTGTGAGCGTTTATAACAGCTTTATGAAGCCGTGTTTCCCATCAGGATGAAGCAGGAATATCGGGATCTGATCCTCCAGGCCACGTCGGCGGAGCGTCTGCGTGTCGGCTGTGAGATCCAGACTCTGTGGAGCGGTTACGGTCGGATCGTGCGAGTTCACCTGGAGGGCTGCGAGCGTTCCTCAGTCGTCGTCAAACACGTCATGTTTCCTAAAGAGTCCCGGGACGCTGACGTGTCTCACCGCCGCAAGGTCCGGTCCTATCAGGTGGAGACGCACTGGTACAAAAACTACAGCTCTAACGAGCGCTGCCGTATCCCAGCATGCCTTGCGGCGCAGTCGTTCGGCGAGGAGCAGCTGATGGTGCTGGAGGATCTGGACGCCGCCGGCTTCCCGGGCAGGAGGACGAGCGTGAGGGACGGCGAGATTAAAGCCTGTCTGCGCTGGCTCGCTAACTTCCACGGGCTTTTCCTCGGAGTCCCTGCGCGCGGCCTGTGGCCCGTCGGAACGTACTGGCACTTAGAGACGCGTCCCGATGAGCTGGAGGCCATGACGGACCTGAAGCTGAAAGCAGCCGCTCCGGAGATCGACGCCGTCCTGAACAGCTGCCGCTTCAAAACCATCTTACACGGAGACGCCAAACTGGCCAACTTCTGCTTCTCTAAGGACGGCTGCGGCATGAAGGACGTCATCTACCTCCTGGGGAGCTGCCTGGATGAGCGCGAGTGCGAGAAAAGAGCTCCTGATTATCTGGACTTTTATTTTTCCGAGCTGAAAGGCGCAGTGccggagaaggagaagaagaacttCTCCGAGCTGGAGGACGAGTGGAGACGCATGTTCGCCTTCGCGTGGACCGATTTTCACCGCTTCCTCCTTGGCTGGATGCCCGGACACCACAAGATCAACCGCTACAGCAAGCGGCTCACACAGGAAGTGCTgaagagactgacagagagatcAGACGGAGCGAAACACTGACTCCAGTCAGACTCGCACAAGACTCGCATCAGACTCGCGTCAGACTCGCATTAGACTCACTTCAGACTCGCACAAGACTCGCATCAGACTCACATTAGACTCACATCAGACTCGTACCAGACTCGCATCAGACTCACATTAGACTCGCATCAGACTCACATTAGACTCACATCAAACTCGCATTAGACTCACTTCAGACTCGCATCAGACTCACATTCAGACTCGCATCAGACTCACATCAGACTCGCATCAGACTCACATCAGACTCGCATCAGACTCGCGTCAGACTTGCATTAGACTCACTTCAGACTCGCATTAGACTCACATCAGACTCGTACCAGACTCACATTAGACTCACATCAGACTCACATCAGACTCGCATCAGACCTAACATCTCATCACTTATCAAACGCTGTTATTACACGgtgcgttctgattggctgagagtcaGGGTGAGGGGCGTGGTCTACACTGATCTGTTAGGAAGCCTTTACTCCAAACGGCTCCTTGATAATAAACACgttattacattataaacacattattatataataaacacGTTATTAAACAGAGCGACTGAGGGACTTTTCACGTCTGTAGATAAACAATGCTGCTGTAGGTCACGTTTGAGTTTGTGgcgtattaatattattttttatatttaataataataataataataattaaaggaGTACAGCAGCGAGCTCTCAGACTTCGGCTCTGTGTGTTCGCTCGTCAGTAACTCGGCTCAGTCCGTTCCTGTGTACAcgagcaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgttgaagTGCACTGATGACAGATCGGGACTCTTCAGTGTTCTCCATCAGCGTGGCTTCTCTTCTGcctctcatggtttcttcctcgtctcgtctcgtctcgtctcaGTGAGATGTTTTTCTCAGTGAGATGTTTTTCTCGTCTCTGGACTGAGATCTGCAGCCGctttcctgtaaagctgcttcgtgaTGATGTCTGATGTGTGTCGCTTCAGGCACTAAAGGAATAAACTGGAATAGAGCTGCTGTTTCACACACCGTCATCTCTGTGTCCCTGAGGCTCTGTGTAAAGCTCCGTCAGCTCGGGGTTTTACAGGAGCTCACGTCCAGACAAAGCTGAAATTCAGAGAGCGTCATTTCTCACACAGCCgctaaattctaaataaataataaagattttcattttattaaagagGAAAGTGAGTCAGTGTTTATTCACTAATGCGCAGAAACTTTAACCTGATAACaaatcagaattaaaataaCTTCACCGGTTCACACGTCCTCACCGTGTCACCGCAggagccctgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtaacgTGAGAGTGAAACGGGATTAAACGTCCTGCAGTGTGCAATAAAGCTGTTAAGAGTCTAAGCTCACCTCTAACCCAATGTTCCACACGGGAAAAACACAAATCTACTACataatacagcacacacacacacacacacacacatttctgacgCACACTCACACCTCCAGATTGTGGAAAACTTTTGAGTCAGCAGCACAAAATATTGAACCTGAGCTCACACACAACATGATACGACCTACAAgcacaatatattattataattgctctatttttattctaatttttacacttttattttaaaatgttacatgttTCTGTCacttctgttatttatttcattattattattggtttatttcaatatttttttttgacaatcttttgttttttatttctgttttttttacgTCACACTGTAAAGCACCAAGCTGCAGtttaaatggatgaaaatggctataaaataaagattattattattattattattattattattgttattattatttaaatggtgTGGTGTAAAGAGTGTATTTGAGACTGAACACTAACAAACACCAGAGTTTGGACTGAATtcagacatttaaaatttacaataaaaactAAAGGATAACGGACAAAAACATCCTAAAGGATTATTTGGTTTGTCCCAGTGACAGAACCCTTAAGTTCTCTGTAGAACCCTGTAGAACCCTGCAGCAGTGTTTCCTCTGCACAGGGTTTCACAcagaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaaggatCTTCAGCATCAGCACTGCATGAAGTCTTCCTTCATCCTTCTCTTCATTCCTGTGATCCTCTCCACACGCACACAGTGCCATAAATCTGGGAATAATATAACGTGAtctgtgaaaaatatttatcatggatcctttttctcttttaaaggaaaaattaa

Function

NR:

description
uncharacterized protein LOC110486949

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911134.2 True 3518 mRNA 0.46 2 397032 400930
XM_034297797.1 False 3491 mRNA 0.46 3 397032 400945

Neighbor

gene id symbol gene type direction distance location
azi2 azi2,LOC107570847,LOC108261202 coding downstream 193295 194648 ~ 203737 (-)
eomesb LOC108256235 coding downstream 238453 148605 ~ 158579 (-)
kdf1a LOC108256236 coding downstream 249894 137689 ~ 147138 (-)
LOC113525569 pttg coding downstream 335480 58422 ~ 61552 (-)
cdk14 cdk14 coding downstream 339270 37985 ~ 57762 (-)
cspg5a LOC108256325 coding upstream 3159 404104 ~ 428410 (-)
zp3d.2 NA coding upstream 129370 530315 ~ 535250 (-)
LOC113524795 NA coding upstream 137250 538195 ~ 544033 (-)
alkbh8 alkbh8 coding upstream 197451 598396 ~ 605015 (-)
fbl fbl,LOC107737817,LOC107686016,LOC107666874,LOC107719117 coding upstream 205142 606087 ~ 612120 (-)
G324516 NA non-coding downstream 42400 353989 ~ 354632 (-)
G324498 NA non-coding downstream 75164 297235 ~ 321868 (-)
G324504 NA non-coding downstream 78029 315399 ~ 319003 (-)
G324488 NA non-coding downstream 147317 247960 ~ 249715 (-)
G324482 NA non-coding downstream 172119 224118 ~ 224913 (-)
G324544 NA non-coding upstream 168644 569589 ~ 570151 (-)
G324545 NA non-coding upstream 181947 582892 ~ 583557 (-)
G324549 NA non-coding upstream 234759 635704 ~ 636105 (-)
LOC117595770 NA non-coding upstream 256377 657322 ~ 658118 (-)
G324562 NA non-coding upstream 279903 680848 ~ 681481 (-)
slc4a7 slc4a7,LOC108256322,LOC107686077,LOC107666816 other downstream 459 350738 ~ 396573 (-)
herpud2 LOC108256328,LOC108431059,LOC107666842 other downstream 65271 234506 ~ 331761 (-)
LOC113523705 LOC108261200 other downstream 185563 199459 ~ 211469 (-)
dyrk1b dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 other upstream 148115 549060 ~ 575271 (-)
G324579 NA other upstream 325682 726627 ~ 727634 (-)
nek11 LOC108256279 other upstream 642368 1043313 ~ 1102117 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other upstream 893920 1294865 ~ 1342071 (-)
G324748 NA other upstream 969531 1370476 ~ 1371029 (-)

Expression


Co-expression Network