etsrp (LOC108256243)


Basic Information

Item Value
gene id etsrp
gene name LOC108256243
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 650918 ~ 657392 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911136.2
GGGAGCGCGAGACCACCGCAATCTGAACTGCAGCGCTCGAGCCCGGAGGATAACGGAACGCTCGCGAGGAAACCTGAAGATGGAGATGTATCAGGCTGGTTACTACACTGAGGACTTCAGGACTCAGGAGGTTCCTGCTGGATTTGATTTCAGTTCTTATGACTACAATGGTGAAGACCTGTCCTTTTTGTTAGACAGCAAAGGAGCGGGCCAGTCGCAGTACACGGACACGTACGCAGAACCGCACAAGGAGCACGTGATCGCCTCCAAAGTTCACGCCACTGATTCTGGATTATTCAATCTGGACACTTTCCCAGAGTTTAGCAGCTGGACGTCATACACTAACGTTCCAGACAGTATggtgatagacagacagacaggaggttTTCAGGATTCAGCCACTCAGACGTATCAGAGTCTGTTTCCGCCATGTCCGTCGTCTCAGAGCGGCCCGTTCGGCTCGGCCGTGGACGCCAGCGGACTTTACCAACCCGCCAAAGAGCTCAGTCACAGAGCGGCGTCTGGCTTAGAGCACGCAGGTGATGCAGAGAGAACCTACGGTTTATACGAGACGGAAGCGCAAAGCAAACCCGTGCCGTACTGGACGGATTATTCCTCATCGGCTTACTGCAGCCAGCTGCTCGCTCATCCTCCGTCATCCTCGTCTCCGGCGCCTCTCACCTCCGAGACGTTTTCTCCTCGTGTGGTGAAGAGACGCACCACGACGTCTCAGAGATTAGACAGAGATGGCGAGGTGTCTCCGGGGATGTCTGCTTACCCAGGATCAGGACCCATTCAGCTGTGGCAGTTCCTCCTGGAGCTTCTCTTAGACTCGGCGTGTCACACCTTCATCACCTGGACCGGCGACGGCTGGGAATTCAAAATGTCCGACCCCGCGGAGGTGGCTAAACGATGGGGTCAGTGCaagaacaaaccaaaaatgaaCTACGAGAAGCTGAGCCGCGGCCTGCGCTACTACTACCACAAGAACATCATCCACAAAACGGCCGGCAAGCGCTACGTCTACCGATTCGTCTGCGACGTGCAGAGCATGCTCGGGAAGAGCGCTCAGGAAGTTCTGGCCAGTATGAACATCTCACCGGCGAACGCAGGATCGCAGACGCCGGCAAACTCCGAGGAGACGGCAGACGTCTGGCAACATTAGCGAACTTTAGCTAGTGAAAGGAGGCGTTCCAAAATACATCCACGTTTCAACACGTCCTCGTCGACTTCTTCTGGAAGTGAAGTACATCCCATGAGCACTTGCAGCACAAGTGGACGAGGTTTTGATGCTAACATGCTGGCTTGCTGACTAGCTAGTGCGCTAATTAGATCAGTACTTTATCGctcacacttatacacaccttCGTCCACCGATTTGGAAAGTAAACTCCAGCGTTGCCTTCTGGATGATTCTACAGGCAAGTGGACACAACCAAGAGGAAGTGGACAAGGGGGAGACAAAAACATTATTGGAACACAGCCTTATTTAAGGACTCATTTTCCGGCTTCTACAGAGTCAGATGTGAGATACAGCACAAATCTTCTCTCTTCTAAATGGAGAACTTTAATCTGTAGATGGTGGGTTGCTACGGAGACGTCTGTTTCCACTATAAAGTGTAGAAATAATCATTATGAACTTTATATTTGCTCTTTTTACTCGGACTCTATAAGGACATAAATGAGGACGTTTATGTGTCCACTGAACCTGCGTCCTTAAGTAAtcaatgcaatttttttaaacatatctactttatatattaatgtggtTAGCTACCTCTTTTAAGcatcaaaacaccaacaaatGATGTACTTCGAATGATGTGATTAGTTTGTATCACCATCCGATTGTGAATTAgtgtaaataaattgttatataaagtcttttttttgtttatttattcatttgtttaagtCTCGACCTTTGACATTTTGGAAAAAGTCCACAAATTGAAAAAGAGGTGCTTAAGGGGtaatttgctaaaaaaaaagggaaaataatgCATTAGCATATA

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0035779 angioblast cell differentiation biological_process
GO:0001525 angiogenesis biological_process
GO:0060217 hemangioblast cell differentiation biological_process
GO:0001570 vasculogenesis biological_process
GO:0003007 heart morphogenesis biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911136.2 True 2015 mRNA 0.48 8 650918 657392

Neighbor

gene id symbol gene type direction distance location
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding upstream 126761 505314 ~ 524157 (+)
ppox ppox coding upstream 167620 469956 ~ 483298 (+)
LOC113524801 NA coding upstream 184295 460213 ~ 466623 (+)
LOC117595771 NA coding upstream 193939 455516 ~ 456979 (+)
dpy19l1l dpy19l1 coding upstream 300369 333684 ~ 350549 (+)
pycard NA coding downstream 1089 658481 ~ 663976 (+)
LOC113524791 LOC108256242 coding downstream 17476 674868 ~ 680370 (+)
gramd1a gramd1a,LOC108256231 coding downstream 61997 719389 ~ 745520 (+)
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding downstream 149249 806641 ~ 816145 (+)
cep85 cep85 coding downstream 174453 831845 ~ 843562 (+)
G324160 NA non-coding upstream 43375 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 51748 598410 ~ 599170 (+)
G324125 NA non-coding upstream 62009 585179 ~ 588909 (+)
G324151 NA non-coding upstream 75780 573006 ~ 575138 (+)
G324140 LOC106578455,LOC103388722 non-coding upstream 93800 552723 ~ 557118 (+)
G324197 NA non-coding downstream 56003 713395 ~ 713801 (+)
G324216 NA non-coding downstream 92059 749451 ~ 753443 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 653519 1310911 ~ 1315115 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 672255 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 682136 1339528 ~ 1368639 (+)
G324123 NA other upstream 15873 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 40909 607612 ~ 610009 (+)
G324143 NA other upstream 92779 557415 ~ 558139 (+)
G324120 NA other upstream 184293 454910 ~ 466625 (+)
G324085 NA other upstream 208631 438391 ~ 442287 (+)
G324206 NA other downstream 88281 745673 ~ 748475 (+)
psmc4 psmc4,LOC107719110 other downstream 116897 774289 ~ 806528 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other downstream 299192 956584 ~ 1010223 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other downstream 460876 1118268 ~ 1163614 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 1242234 1899626 ~ 1919710 (+)

Expression


Co-expression Network