LOC113524791 (LOC108256242)


Basic Information

Item Value
gene id LOC113524791
gene name LOC108256242
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 674868 ~ 680370 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911138.2
CAGACTCATGCAGGAAACACTGCGCGGTTTGAGACGCACAACTACAGCACAACTACAGCACAACTACAATCCTCCAACTTCTTCTGCGCACTTCTTCACTGCAGACATTACAGGGAGTTCAGGACCGAACTTTGCTCACTATGGGAGTTCGTGGACTTCACAGCTACATCGAGAGGAACAGTGATTTACTGAAGACATGCTGGTTTAGAGAAAGCAAACTCATCATCGATGGATCCAACTTGTACTACTTTCTTTACTTCAGGTCTGATTTGGACCAAGCACACGGCGGAGATTACGATGGCTTTGAGAAAATAGTTACACAGTTTTTCAAAAATCTCCGAATCTGCGATATTGAGCCCTACGTGGTGCTCGATGGAGGGACGGACGTCAGTGACAAAAAATTTGACACCCTGAAGACAAGATGCCAAGAAAGAATCCGAAGAGCCAATGCCTTGTCCAGGGGCCGTTCAGGAGAAGTTTTACCCATTCTCATCAAAAACGTGTTCAAGCAGATCCTCTGGAAACTCGGAATTCCCTTCATTCAGTGTCTGGCAGAGGCGGATTGGGAAGTAGCCGCATTGGCCAGCGAGTGGAACTGTCCCGTTCTGTCCAACGACAGCGATTTCTACATCTTCAACATCAAGAGAGGATTTTTGCCCATCTCTCATTTCCAGTGGAGGAAATTGAGTCTGCTGAAAcgcagtaataaaaaaatcatcccTGCCAAGTCATACCATGTTCTAAATCTATGTACTGCCTTTAACCGCATGAATAAGTATAATCTTTCACTTTTTGCCACCATCCTGGGCAATGACTATACCAACTTGGACAAGAGTGCATTTCCAAACTTCTCAAAGTTCTCAACCAGACCTGGAGGAACTGCCCAGATCGATGGCTTACTCACGTGGTTATCACGTTTCCCCAGCCCAAAAGAAGCCATCGCTGCTCTCCTCAGCCCCCTGGGGAAGAACAAGAAATCAGCCAGCATTCGAAAAGAAATATATCAGGGAATGGCAGAGTACAGACTCAATCCCAGCTCCATTGCCCAGTTCTTCCTAAGCGGAGAACCTCAGAGAAGGCCTCTAGGCCCTTTACAGAAGCTCCCGGACTGGACTCTGAAACCTCTGGCAGAAGGTAAACTGGCTTCCACCATCATTGACATCCTGACACTGCAGAGGGTCATGCTGAACTTCCAGGTGGAGGACTTTGGGctgagcagcagcagcgagcCGTCTCGGCTGATACGACAGGTGACGTACGGCGTACTGCTGTGTACCAGGTGGCAGACAGTCGGTAAACGCAGCACGTCTTCTGGAGAGAAGCAGCAATACAACGTGGAGGAATACGACAGGCAGGGAATGACGCTGACCAGCTCCATGGTTCCAGCTGTTCTCCCGAGACATGTAGTAACACACCTTCACCTGGACTCACTGTGGGAGGCCCCAGAGAATTTACGCCTGCAGGTCGTGTTGCATGCGCTGCGTGTGTCTCCGTTGTTTAATTCATTCCTCATCCCAGCAAATCTGCAGCTAGCCGTGTACGTCACATGTTTCTGGCTAAATCATGTGCAACCCGAGCCAAAAGCGGAAATGTTCTGGGCTTTACTCATCGGCCTGGTCTATGGACACCTGTGCAGAGAACATCAGACTGAGATAGAGGCAGGCATGGTGATTTCGAGGCTTAAAAACCTGCAGGATCGTAAAGGACAGAAGCTTTTGGACCTGGAGCTGGCTCACGCTTACTGTCAGTGGCAGTGCTGTTTGAAGATCAGCTTCAATCTGAACCAGCTACTGAATCATCCAGTGCCTGAGCCGGAGCTAGCATGgTTGTACAGCGGCTCTCTGGTGCACACCGTCGCTCACGAGCTGATGAGGGGCGTCGAACCCGAGTCTCTTCTCACCGGAGCCTCTTTCGCCGTGGAGCTTTACCGAAATCTACAGGCCGCGGTGGAGCGCGAGCTGGACGACGACTTCATCGTGAGAATGAGGATGAGGGCGGGGCCGACGTCGCGCAGCGCGAGGTGCGATCCAGCAGACGAACTGAGCAAAATGTTCAAACATCTGATGGctgatgaagaggaggatgacGACGGTGACAAGATCTACGAGGAAACCTGCAGCGTTCGCACCAGACACGTAAGCCGAGCTCACACGGAGGATCCGAGGGCCAAGAAGTACGAACTTGTGAAGTGGTGTTAGATACGATACGGATCAGGACAAAACAACTGAACTGAAACTGATTGGTTTTTCATTTATCACTGCTTTGCtgtcaaaaaaaggaaattattcCCAGCacttttattctgattttaatGAACCGTGTGTTTTAATTGTGAAGTTTCTCATGAATTGTAACAGACTTGTGTGTGCTCCACAAGGGGGCGCTCTTACTCAGGCGTGCATCAGCATGTGTTCGGCGTTTTTATCCCCGCTGCCATGGCACTATATCAACAATCAGCAATATTTACTCTGCCACAGCAGCCTAAGATGAAGATTTCTTTACCGTGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911138.2 True 2509 mRNA 0.49 5 674868 680370

Neighbor

gene id symbol gene type direction distance location
pycard NA coding upstream 10892 658481 ~ 663976 (+)
etsrp LOC108256243 coding upstream 17476 650918 ~ 657392 (+)
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding upstream 150711 505314 ~ 524157 (+)
ppox ppox coding upstream 191570 469956 ~ 483298 (+)
LOC113524801 NA coding upstream 208245 460213 ~ 466623 (+)
gramd1a gramd1a,LOC108256231 coding downstream 39019 719389 ~ 745520 (+)
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding downstream 126271 806641 ~ 816145 (+)
cep85 cep85 coding downstream 151475 831845 ~ 843562 (+)
atp2c1 atp2c1,LOC107666823,LOC107592020,LOC107668304,LOC107600500 coding downstream 177740 858110 ~ 893602 (+)
rpp25l LOC108256289 coding downstream 224093 904463 ~ 906704 (+)
G324160 NA non-coding upstream 67325 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 75698 598410 ~ 599170 (+)
G324125 NA non-coding upstream 85959 585179 ~ 588909 (+)
G324151 NA non-coding upstream 99730 573006 ~ 575138 (+)
G324142 dyrk1b,LOC102785375 non-coding upstream 118349 555797 ~ 556519 (+)
G324197 NA non-coding downstream 33025 713395 ~ 713801 (+)
G324216 NA non-coding downstream 69081 749451 ~ 753443 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 630541 1310911 ~ 1315115 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 649277 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 659158 1339528 ~ 1368639 (+)
G324123 NA other upstream 39823 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 64859 607612 ~ 610009 (+)
G324143 NA other upstream 116729 557415 ~ 558139 (+)
G324120 NA other upstream 208243 454910 ~ 466625 (+)
G324085 NA other upstream 232581 438391 ~ 442287 (+)
G324206 NA other downstream 65303 745673 ~ 748475 (+)
psmc4 psmc4,LOC107719110 other downstream 93919 774289 ~ 806528 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other downstream 276214 956584 ~ 1010223 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other downstream 437898 1118268 ~ 1163614 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 1219256 1899626 ~ 1919710 (+)

Expression


Co-expression Network