pycard



Basic Information


Item Value
gene id pycard
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 658481 ~ 663976 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026911161.2
TAAAACGCATCTGTTGCAGGaaagaggaggagcaggagaggAGCAGGAGAGGAGTTTTACTCGCTGGAAAGGTTTTATTTCCGTCCTGAGCGTTTTCAGGGACGCGCCCCGCCATTCAGCCACTAGACACACGGAAGTGTCGAGGTGACTGACGGTGAAATCGCCGGTGAGTCTGTCAGTGCTTCATCCGGGAACAGGAGGAAAAGCGCGCGCTcaggtttccttcaggttcaggttcaggttcaggttctgcAGATCCAGCTAGAACACAATGTCCGGGgaCATACGTTCTCCACTTCCGATGGATGAGGTGGATCAGTCGACAGCGTCACGACCGTGTgGTGCCGTCTTTATTGATCAGCATGTAGACATACTTATACAGAGAGCCTGCTGTGTGGAACCCGTACTGGACAAGCTCCTGAGTATGAGGGTCATCAACGATGAGGAGTACCAAGACATTAAAACGGAGAAAACACCTCAGAAACAAATGAGGGCTTTACTCATGGGGCCTATAAGATCCAGGGGTGATCAAGGAAAACAGCTTCTGTACGCTACTCTGAAGGCCCAGCAGCCGTTAATGATGGAGGACCTCAGCGcttaaagaatttatttacaatcGTTATGgttgtttttcttattatttgtgaACCTCGATACCATACATATACCTCAAATGTAGTCTGTCAGTAAGATAAATACAGACATAGCTGGAGAAAGTTACATTTATAAGAAGCatgtggtaaataaataaaaagcacggATCTGCCAGACTAACTAAacaaaatgtgtgatttgtgtTTAATCACAAATCCAGTCAATAAACTTATCTTATCAAACTTTAATCAAACTTCATGGCTAATACCAGCTTAGAATGTGAAGAACATTAGCTAAGAAACAGTTATTTGACTCTAACTCCGTGTGATATTAAAATCTGTAAGATAAACTGTGCTTTCTTGTACAGCCGTTGTCATCAggactcaaacacacatgctgacTGGGATTGTGAAAGAATTTGATGCAAAGAATTACATTCCAAATAAACCTTTCGTttattttgttgattatttaaaatttccAAAGGATGACAttccaattaattaatttgattaactgattattaaaaaattgaatccacagattaaaatttcattcatatTGGCGGTACTTGGGTTCTGAATGGTTATATTTGCACCTGTTAAATAGAAGAAGAATAATCATGCAACCTTTACATCTGTTTACTTTAAACCAAAATCAATTatgctaattttaaaaaaaataaatatgttttccaaatactgaaaatatctAACTTTCAAAAACAGACTGCAGAGTAACTCATGCGATGATCTCTGCTAAGAACAAACATGTGCTTAGACTccaatctctctcttttcctggtaacttacacacacacacacacacacacacacacacactccgccaGAGAGTGTCCTACTGACTGTGTATCGTAAAGTTCTTAGAAACCGGACGCTTGCATTCAGAAGATAAAGATCTTTTACTACATAAATGCAATGGCCTAAAATCTTATTGATGTTTAACGTCCAAACCATTCGGCCAATCAAAATTGGTTTTcgtattatgtaaaatataattacgTAACCATTAATCTAATCTTAAAAATTCTCTTAAAAAGCtaatttgtcttatttattacaAGACGTCAACGTCAGACACATTTTCCCCTCAATTAACGTTAGCTattaaagtacattttgttGGCAGGcaacaaattataaatttagTTAAACgtgtaaattataaaaaaaaaaaaaacataaacaataatattttttttgctataactaaactataaataattccagGAAATTAATTTTGACCCGACAATCTGAGCCCCTGAGCTAAACCCAGCGCTTTCAcactgttaatattattattattatattaataatattacatgAAATAGCTGAAATTGACTTTTATTTAAAGGTAAAACACGTCCTGGTGCAAAAGAACTGTGATTTCTGATGTAGCCTAGctgattttatacactttatacataGATCCGATGTTTTATCGCCaagattttcatattttaattggCAGAGGACAATCATTTGTTTTTGGatcaatgacaaaaataatttttaagaacatcaaatttaaaatgaattaatttcatGGCTTTATACAATGACTATTATGACATTTGCTCTATAAttgtaaagaattttatttttacttaggAATAGTGCAAAGAAATCATTTAATCTATgctatatatatttcatatcatacaaaaaaaaatacaaaaatgcaatgaaaaaaaaataataatgttataattagTATTTTTtctagattgttttttttataattgttagCAACTCCTCTGATTAAATCTGATTATCTGTGAGAAGTTCATGTAAAGACGCTGATTTTTGTTTTGcgtttattaatttaaattgtttataaaagaaattgtttgtaattttttttctaaaatatccAAAGTACAGGATCTATTTTAATCTGAAATACTGTTGGTAGATTGTATGACCATAAAaaccacatttatataaatttttttatttgtttgtttggtactttaaattcaaatgtacataaaataaGAAGTacgaaaaaataaacatatcaaTGTCCTTGAAATGAAACTATAGTTATGTGTTTGCT
>XM_026911162.2
TAAAACGCATCTGTTGCAGGaaagaggaggagcaggagaggAGCAGGAGAGGAGTTTTACTCGCTGGAAAGGTTTTATTTCCGTCCTGAGCGTTTTCAGGGACGCGCCCCGCCATTCAGCCACCAGTAGACACACGGAAGTGTCGAGGTGACTGACGGTGAAATCGCCGGTGAGTCTGTCAGTGCTTCATCCGGGAACAGGAGGAAAAGCGCGCGCTcaggtttccttcaggttcaggttcaggttcaggttctgcAGATCCAGCTAGAACACAATGTCCGGGgaCATACGTTCTCCACTTCCGATGGATGAGGTGGATCAGTCGACAGCGTCACGACCGTGTgGTGCCGTCTTTATTGATCAGCATGTAGACATACTTATACAGAGAGCCTGCTGTGTGGAACCCGTACTGGACAAGCTCCTGAGTATGAGGGTCATCAACGATGAGGAGTACCAAGACATTAAAACGGAGAAAACACCTCAGAAACAAATGAGGGCTTTACTCATGGGGCCTATAAGATCCAGGGGTGATCAAGGAAAACAGCTTCTGTACGCTACTCTGAAGGCCCAGCAGCCGTTAATGATGGAGGACCTCAGCGcttaaagaatttatttacaatcGTTATGgttgtttttcttattatttgtgaACCTCGATACCATACATATACCTCAAATGTAGTCTGTCAGTAAGATAAATACAGACATAGCTGGAGAAAGTTACATTTATAAGAAGCatgtggtaaataaataaaaagcacggATCTGCCAGACTAACTAAacaaaatgtgtgatttgtgtTTAATCACAAATCCAGTCAATAAACTTATCTTATCAAACTTTAATCAAACTTCATGGCTAATACCAGCTTAGAATGTGAAGAACATTAGCTAAGAAACAGTTATTTGACTCTAACTCCGTGTGATATTAAAATCTGTAAGATAAACTGTGCTTTCTTGTACAGCCGTTGTCATCAggactcaaacacacatgctgacTGGGATTGTGAAAGAATTTGATGCAAAGAATTACATTCCAAATAAACCTTTCGTttattttgttgattatttaaaatttccAAAGGATGACAttccaattaattaatttgattaactgattattaaaaaattgaatccacagattaaaatttcattcatatTGGCGGTACTTGGGTTCTGAATGGTTATATTTGCACCTGTTAAATAGAAGAAGAATAATCATGCAACCTTTACATCTGTTTACTTTAAACCAAAATCAATTatgctaattttaaaaaaaataaatatgttttccaaatactgaaaatatctAACTTTCAAAAACAGACTGCAGAGTAACTCATGCGATGATCTCTGCTAAGAACAAACATGTGCTTAGACTccaatctctctcttttcctggtaacttacacacacacacacacacacacacacacacactccgccaGAGAGTGTCCTACTGACTGTGTATCGTAAAGTTCTTAGAAACCGGACGCTTGCATTCAGAAGATAAAGATCTTTTACTACATAAATGCAATGGCCTAAAATCTTATTGATGTTTAACGTCCAAACCATTCGGCCAATCAAAATTGGTTTTcgtattatgtaaaatataattacgTAACCATTAATCTAATCTTAAAAATTCTCTTAAAAAGCtaatttgtcttatttattacaAGACGTCAACGTCAGACACATTTTCCCCTCAATTAACGTTAGCTattaaagtacattttgttGGCAGGcaacaaattataaatttagTTAAACgtgtaaattataaaaaaaaaaaaaacataaacaataatattttttttgctataactaaactataaataattccagGAAATTAATTTTGACCCGACAATCTGAGCCCCTGAGCTAAACCCAGCGCTTTCAcactgttaatattattattattatattaataatattacatgAAATAGCTGAAATTGACTTTTATTTAAAGGTAAAACACGTCCTGGTGCAAAAGAACTGTGATTTCTGATGTAGCCTAGctgattttatacactttatacataGATCCGATGTTTTATCGCCaagattttcatattttaattggCAGAGGACAATCATTTGTTTTTGGatcaatgacaaaaataatttttaagaacatcaaatttaaaatgaattaatttcatGGCTTTATACAATGACTATTATGACATTTGCTCTATAAttgtaaagaattttatttttacttaggAATAGTGCAAAGAAATCATTTAATCTATgctatatatatttcatatcatacaaaaaaaaatacaaaaatgcaatgaaaaaaaaataataatgttataattagTATTTTTtctagattgttttttttataattgttagCAACTCCTCTGATTAAATCTGATTATCTGTGAGAAGTTCATGTAAAGACGCTGATTTTTGTTTTGcgtttattaatttaaattgtttataaaagaaattgtttgtaattttttttctaaaatatccAAAGTACAGGATCTATTTTAATCTGAAATACTGTTGGTAGATTGTATGACCATAAAaaccacatttatataaatttttttatttgtttgtttggtactttaaattcaaatgtacataaaataaGAAGTacgaaaaaataaacatatcaaTGTCCTTGAAATGAAACTATAGTTATGTGTTTGCT

Function


GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0032090 Pyrin domain binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026911161.2 False 2673 mRNA 0.33 5 658481 663976
XM_026911162.2 True 2676 mRNA 0.33 5 658481 663976

Neighbor


gene id symbol gene type direction distance location
etsrp LOC108256243 coding upstream 1089 650918 ~ 657392 (+)
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding upstream 134324 505314 ~ 524157 (+)
ppox ppox coding upstream 175183 469956 ~ 483298 (+)
LOC113524801 NA coding upstream 191858 460213 ~ 466623 (+)
LOC117595771 NA coding upstream 201502 455516 ~ 456979 (+)
LOC113524791 LOC108256242 coding downstream 10892 674868 ~ 680370 (+)
gramd1a gramd1a,LOC108256231 coding downstream 55413 719389 ~ 745520 (+)
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding downstream 142665 806641 ~ 816145 (+)
cep85 cep85 coding downstream 167869 831845 ~ 843562 (+)
atp2c1 atp2c1,LOC107666823,LOC107592020,LOC107668304,LOC107600500 coding downstream 194134 858110 ~ 893602 (+)
G324160 NA non-coding upstream 50938 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 59311 598410 ~ 599170 (+)
G324125 NA non-coding upstream 69572 585179 ~ 588909 (+)
G324151 NA non-coding upstream 83343 573006 ~ 575138 (+)
G324142 dyrk1b,LOC102785375 non-coding upstream 101962 555797 ~ 556519 (+)
G324197 NA non-coding downstream 49419 713395 ~ 713801 (+)
G324216 NA non-coding downstream 85475 749451 ~ 753443 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 646935 1310911 ~ 1315115 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 665671 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 675552 1339528 ~ 1368639 (+)
G324123 NA other upstream 23436 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 48472 607612 ~ 610009 (+)
G324143 NA other upstream 100342 557415 ~ 558139 (+)
G324120 NA other upstream 191856 454910 ~ 466625 (+)
G324085 NA other upstream 216194 438391 ~ 442287 (+)
G324206 NA other downstream 81697 745673 ~ 748475 (+)
psmc4 psmc4,LOC107719110 other downstream 110313 774289 ~ 806528 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other downstream 292608 956584 ~ 1010223 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other downstream 454292 1118268 ~ 1163614 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 1235650 1899626 ~ 1919710 (+)

Expression



Co-expression Network