rpp25l (LOC108256289)


Basic Information

Item Value
gene id rpp25l
gene name LOC108256289
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 904463 ~ 906704 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911498.2
AGTAGAACCAGTGCAACCTGCAGGCGCGCTTGAACGCTGCTCGTGTTGACGCGCCCCACGCTGATGCTCTTATCTCTGCTAAGCTAATAACTTAGCATTAAATTTagcattgttgtgtgtgtgagatcaaaTGCAGAACATTTAACAGCAGGTGTGTGAAGCAGGTGATGGAGTAAAAGTGAAAGATGCGAGTTTTATAAGCGCAGTTTATTTCAGAATGAGTCCTGAGCTGAGCTGATTAGCTAAAGTGCTAACTAGCTTAGCTGAAGttcatcagtgtgttacagtgaaagCTGAGATGGAGAACTACAGGAAGGCGGGCGTGGTCGAGCAGCCGTGTCTCTGCCCGTTTAATGACCTCCTCTGTGACGGCGCTCCCGTGGTCCGGGTTCGAGACGGCAGCAAAATCCGCAACCTGATGAGGTTCGCTCAGAGCCGGATGGAGGGCCGGGCGGAGAAGCCGCCAGAGAGCGGCGGAGGCGGAGAGGAAGCGGAACCGAGCGCCGAATCACAGCTGTGTCGTCAGATCGTGTTCACGGGCGTCGGTCCGAGCGTCTCAAAGGCCATCACGTGTGTGGAGATCCTGAAGCGGCGCGTTGGGAGGCTGCACCAGGTCACGCGGCTGGTCTACAGCTCGCTGCAGGAGACGTGGGAGCCGCTGGAGCCGAGCGCCGGCCTTGACAGCATCACCGTGTCCCGGAACATCCCCGCCATCTGGGTGCTGCTCTCTAGAGACCCGCTGGACTCGAACACGGCCGGATACCAGGCGCCCGGGAGCTTCGACGCGCTGTGGGTGCAGGCCGCCGCTAAAGAGGAGCGAGAGAATCAGAGGAGGAAGAgcggaggaagaggaggaggaagtggaaGAGGAAAAGGACCACGCAGACAGACGACGCGTCCCAGAGTCGAACGGAAAACTTCAGGACAAGCGTCAGGAGCGCACTGAGGCTACCAACACCAGGCTTTACCAAAAATAGGCGGAGCTTAAGTTGACCATGACCGGCCAATCAGGAAGGAGATTTTACATCATCACAGTAATAGCTAATTATCTCGCTTGTTAGTGAATTCGGCTATCAGAAAGCTCATGCTGGAGAAGTAACGTCTCTGAGCTGTTACACAGAATTGAATGATCATGAGCCTCACACTGAGCTGaagaaatgcaaataaaatgaacGCGTGGTGATGTCATGATCAGGGTTAACTTcatttaagctccgcccccatcATGCAGAAACATCAGCATATTTAAATCAGGACATTAGAGAGGTTTTGGCCAAACTGGGTATAAActaataatttttctttttaaagagtttttttttgtttttttaattattatttcagaattaagtgaagtttttctttatttctttgtgttttagTTTTCAGGGAGTTTAATTGACATGATAAACTTCGTCATACTTCTTTTTCCAAAGAATAACGAAATAAAATTTGAGAGTTTTAAAGTCTGTAAAGacagaaaacaatgaaaaatgctAACAgagaataattataattaaagtaTTTCTCTTCCTTAAAAGTTTCTTGTTTATtagtttcttgtttatttttatctttatttca
>XM_026911499.2
AGTAGAACCAGTGCAACCTGCAGGCGCGCTTGAACGCTGCTCGTGTTGACGCGCCCCACGCTGATGCTCTTATCTCTGCTAAGCTAATAACTTAGCATTAAATTTagcattgttgtgtgtgtgagatcaaaTGCAGAACATTTAACAGCAGCTGAGATGGAGAACTACAGGAAGGCGGGCGTGGTCGAGCAGCCGTGTCTCTGCCCGTTTAATGACCTCCTCTGTGACGGCGCTCCCGTGGTCCGGGTTCGAGACGGCAGCAAAATCCGCAACCTGATGAGGTTCGCTCAGAGCCGGATGGAGGGCCGGGCGGAGAAGCCGCCAGAGAGCGGCGGAGGCGGAGAGGAAGCGGAACCGAGCGCCGAATCACAGCTGTGTCGTCAGATCGTGTTCACGGGCGTCGGTCCGAGCGTCTCAAAGGCCATCACGTGTGTGGAGATCCTGAAGCGGCGCGTTGGGAGGCTGCACCAGGTCACGCGGCTGGTCTACAGCTCGCTGCAGGAGACGTGGGAGCCGCTGGAGCCGAGCGCCGGCCTTGACAGCATCACCGTGTCCCGGAACATCCCCGCCATCTGGGTGCTGCTCTCTAGAGACCCGCTGGACTCGAACACGGCCGGATACCAGGCGCCCGGGAGCTTCGACGCGCTGTGGGTGCAGGCCGCCGCTAAAGAGGAGCGAGAGAATCAGAGGAGGAAGAgcggaggaagaggaggaggaagtggaaGAGGAAAAGGACCACGCAGACAGACGACGCGTCCCAGAGTCGAACGGAAAACTTCAGGACAAGCGTCAGGAGCGCACTGAGGCTACCAACACCAGGCTTTACCAAAAATAGGCGGAGCTTAAGTTGACCATGACCGGCCAATCAGGAAGGAGATTTTACATCATCACAGTAATAGCTAATTATCTCGCTTGTTAGTGAATTCGGCTATCAGAAAGCTCATGCTGGAGAAGTAACGTCTCTGAGCTGTTACACAGAATTGAATGATCATGAGCCTCACACTGAGCTGaagaaatgcaaataaaatgaacGCGTGGTGATGTCATGATCAGGGTTAACTTcatttaagctccgcccccatcATGCAGAAACATCAGCATATTTAAATCAGGACATTAGAGAGGTTTTGGCCAAACTGGGTATAAActaataatttttctttttaaagagtttttttttgtttttttaattattatttcagaattaagtgaagtttttctttatttctttgtgttttagTTTTCAGGGAGTTTAATTGACATGATAAACTTCGTCATACTTCTTTTTCCAAAGAATAACGAAATAAAATTTGAGAGTTTTAAAGTCTGTAAAGacagaaaacaatgaaaaatgctAACAgagaataattataattaaagtaTTTCTCTTCCTTAAAAGTTTCTTGTTTATtagtttcttgtttatttttatctttatttca
>XM_034297868.1
AGTAGAACCAGTGCAACCTGCAGGCGCGCTTGAACGCTGCTCGTGTTGACGCGCCCCACGCTGATGCTCTTATCTCTGCTAAGCTAATAACTTAGCATTAAATTTagcattgttgtgtgtgtgagatcaaaTGCAGAACATTTAACAGCAGGTGTGTGAAGCAGGTGATGGAGTAAAAGTGAAAGATGCGAGTTTTATAAGCGCAGTTTATTTCAGAATGAGTCCTGAGCTGAGCTGATTAGCTAAAGTGCTAACTAGCTTAGCTGAAGttcatcagtgtgttacagtgaaagCTGGTTgggttttgctttgttttgcagCTGAGATGGAGAACTACAGGAAGGCGGGCGTGGTCGAGCAGCCGTGTCTCTGCCCGTTTAATGACCTCCTCTGTGACGGCGCTCCCGTGGTCCGGGTTCGAGACGGCAGCAAAATCCGCAACCTGATGAGGTTCGCTCAGAGCCGGATGGAGGGCCGGGCGGAGAAGCCGCCAGAGAGCGGCGGAGGCGGAGAGGAAGCGGAACCGAGCGCCGAATCACAGCTGTGTCGTCAGATCGTGTTCACGGGCGTCGGTCCGAGCGTCTCAAAGGCCATCACGTGTGTGGAGATCCTGAAGCGGCGCGTTGGGAGGCTGCACCAGGTCACGCGGCTGGTCTACAGCTCGCTGCAGGAGACGTGGGAGCCGCTGGAGCCGAGCGCCGGCCTTGACAGCATCACCGTGTCCCGGAACATCCCCGCCATCTGGGTGCTGCTCTCTAGAGACCCGCTGGACTCGAACACGGCCGGATACCAGGCGCCCGGGAGCTTCGACGCGCTGTGGGTGCAGGCCGCCGCTAAAGAGGAGCGAGAGAATCAGAGGAGGAAGAgcggaggaagaggaggaggaagtggaaGAGGAAAAGGACCACGCAGACAGACGACGCGTCCCAGAGTCGAACGGAAAACTTCAGGACAAGCGTCAGGAGCGCACTGAGGCTACCAACACCAGGCTTTACCAAAAATAGGCGGAGCTTAAGTTGACCATGACCGGCCAATCAGGAAGGAGATTTTACATCATCACAGTAATAGCTAATTATCTCGCTTGTTAGTGAATTCGGCTATCAGAAAGCTCATGCTGGAGAAGTAACGTCTCTGAGCTGTTACACAGAATTGAATGATCATGAGCCTCACACTGAGCTGaagaaatgcaaataaaatgaacGCGTGGTGATGTCATGATCAGGGTTAACTTcatttaagctccgcccccatcATGCAGAAACATCAGCATATTTAAATCAGGACATTAGAGAGGTTTTGGCCAAACTGGGTATAAActaataatttttctttttaaagagtttttttttgtttttttaattattatttcagaattaagtgaagtttttctttatttctttgtgttttagTTTTCAGGGAGTTTAATTGACATGATAAACTTCGTCATACTTCTTTTTCCAAAGAATAACGAAATAAAATTTGAGAGTTTTAAAGTCTGTAAAGacagaaaacaatgaaaaatgctAACAgagaataattataattaaagtaTTTCTCTTCCTTAAAAGTTTCTTGTTTATtagtttcttgtttatttttatctttatttca

Function

NR:

description
PREDICTED: ribonuclease P protein subunit p25-like protein

GO: NA

KEGG:

id description
K14525 RPP25; ribonucleases P/MRP protein subunit RPP25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911498.2 False 1584 mRNA 0.48 2 904463 906704
XM_026911499.2 False 1442 mRNA 0.48 2 904463 906704
XM_034297868.1 True 1611 mRNA 0.47 2 904463 906704

Neighbor

gene id symbol gene type direction distance location
atp2c1 atp2c1,LOC107666823,LOC107592020,LOC107668304,LOC107600500 coding upstream 10861 858110 ~ 893602 (+)
cep85 cep85 coding upstream 60901 831845 ~ 843562 (+)
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding upstream 88318 806641 ~ 816145 (+)
gramd1a gramd1a,LOC108256231 coding upstream 158943 719389 ~ 745520 (+)
LOC113524791 LOC108256242 coding upstream 224093 674868 ~ 680370 (+)
LOC117595801 NA coding downstream 1924 908628 ~ 914250 (+)
cmtm7 cmtm7,cklf7,LOC106606093 coding downstream 16461 923165 ~ 930865 (+)
cmtm6 NA coding downstream 27450 934154 ~ 955393 (+)
LOC113525078 LOC108256274,LOC108256268,LOC108256164 coding downstream 197035 1103739 ~ 1124181 (+)
LOC117595784 LOC108256266,LOC108256164 coding downstream 231575 1138279 ~ 1166958 (+)
G324216 NA non-coding upstream 151020 749451 ~ 753443 (+)
G324197 NA non-coding upstream 190662 713395 ~ 713801 (+)
G324160 NA non-coding upstream 296920 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 305293 598410 ~ 599170 (+)
G324125 NA non-coding upstream 315554 585179 ~ 588909 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 404207 1310911 ~ 1315115 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 422943 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 432824 1339528 ~ 1368639 (+)
G324305 NA non-coding downstream 434421 1341125 ~ 1342780 (+)
G324328 NA non-coding downstream 471842 1378546 ~ 1378940 (+)
psmc4 psmc4,LOC107719110 other upstream 97935 774289 ~ 806528 (+)
G324206 NA other upstream 155988 745673 ~ 748475 (+)
G324123 NA other upstream 269418 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 294454 607612 ~ 610009 (+)
G324143 NA other upstream 346324 557415 ~ 558139 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other downstream 49880 956584 ~ 1010223 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other downstream 211564 1118268 ~ 1163614 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 992922 1899626 ~ 1919710 (+)
bola1 bola1,LOC107592543 other downstream 1235488 2142192 ~ 2144525 (+)
LOC113533074 LOC108256184 other downstream 1298142 2204846 ~ 2215410 (+)

Expression


Co-expression Network