nek11 (LOC108256279)


Basic Information

Item Value
gene id nek11
gene name LOC108256279
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1043313 ~ 1102117 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911508.2
CCCCTTTAAGCGTAACCATGACAACGAGGCCAACACGCGGAAGCTGCACACGCTTAACTCACAGGTGTAGATTTGGACACCATGCCTAAATTCCGTGAACTGGAAGCTGAgtctcctcatcatcctcatcatcctcatcctcatcatcctcatcctcatcctctgcTGGCCAACAGATACGTCATTCAGCAGAGACTCGGCAGGGGAAGTTTCGGCACTGTGTATCTCATTGAAGACACAAAAACGACAATCAGAGACAAACTTAAAGTTCTGAAGGAGATCCCAGTTGGAGATTTGAAGCCGGATGAGACGGTGAAGGCCACACAGGAAGCTCAGCTCCTCTCGCAGCTCCATCATCCAGCCATCCTCAGATTCTACACCAGCTTCCTGGAGAGAGACGCTTTCTGCATCATCACCGAGTTCTGCGAGgacGGGGATTTGGAGTGTAAGCTGGAGCGGTTGCGTGTCTCAGGAGAAGCTCTGTCTGAGTCTCAGATCAGGGAGTGGCTCGTTCAGCTGCTGCTGGGGGTCGACTACATGCACGAGAGGCGGATTCTACACCGAGACCTGAAAACCAAGAATGTGTTCCTGAAGAAGAACGCTGTAAAGATCGGTGATTTTGGCGTGTCATGCCTGCTGATGGGGTCATGTGACTTCGCCACCACGTTCACAGGAACGCCTTACTACATGAGTCCTGAGGCTCTCGGTCACCAAGGTTACGACTCCAAATCAGACATGTGgtctttAGGCTGCATCCTGTATGAGATGTGCTGCCTGAAACATGCCTTTGAGGGACACAACTTCCTGTCCGTGGTGCAGAAGATCATGGAAAGTTCCACGCCGTCCCTGTCGGAGAAATACTCACCAGAGCTCAACTCCTTAATGCAGAGgatgtTGGAGAAATCCCCGTCACTGAGGGTTTCCGCAGCTGAAGCTCTGAGCAGTAGCGTTATTAAGGAGCTGACTCAGtgtgtgaagCAGCAGCTCTCGGAGGGGACGGCGGGGGACGACAGAGACGCGTCTCACATCGCTAGCGTGCTGCAGAAGAAAGTGCACCTGCAGACGCTGAGGGAAAGGTCAGAGGTCGAGAAGATGAGTCCTCGAGAGCGGATGAGGCTGAGGAAGCAGCAGGCCGCTGACGACAGAGCCAGGAAGCTAAAACATATTGTGGaggagaaatataaagaaaatcagCAGCGCATGATTGAGCTCCGGTCCAAAAACTTCCAAAGAGTCAGCATCAACGTTCTCACTGAGAAAGCTGAGGACACAGTGAGACAAATCCAGCCAATCAGACAAGAGGATGCTACACCAAGCAGCCATCCTGGACCAATGGGAGAGCAGCTCACTGAACATGacatcCCTGAGGACCCTCAGGCAGCAGAAGTGTATTATTCTGAAGATGGATTCGAGTCGTGTTCAGATGAAGATGATTTCTGCTCTGAAGTTCCCACACAggACAGTGATCTGGAGGCCGTGGTGCGACACATGGAGGACGTTCTGGGGGAGAAATCTGTTGcaggtGAAGCTGACGGAGGTGTGTCTCACGCGGtacagtgGCGTTTCCTTCACCGTAGGGACccgagacaggaggagagagtgtgattggtggagagagagaagtgattCAGGAAGATGGAGGCAGTGAAGATGGAGACAGAGTGCGTTTAGTGTGGAGGGGGCTGATTACCAGCAGCCTTGATTACCTTCAATAATCAGCTACATGCACtgctttactgtgtgtgtg
>XM_034297958.1
CCCCTTTAAGCGTAACCATGACAACGAGGCCAACACGCGGAAGCTGCACACGCTTAACTCACAGGTGTAGATTTGGACACCATGCCTAAATTCCGTGAACTGGAAGCTGAgtctcctcatcatcctcatcatcctcatcctcatcatcctcatcctcatcctctgcTGGCCAACAGATACGTCATTCAGCAGAGACTCGGCAGGGGAAGTTTCGGCACTGTGTATCTCATTGAAGACACAAAAACGACAATCAGAGACAAACTTAAAGTTCTGAAGGAGATCCCAGTTGGAGATTTGAAGCCGGATGAGACGGTGAAGGCCACACAGGAAGCTCAGCTCCTCTCGCAGCTCCATCATCCAGCCATCCTCAGATTCTACACCAGCTTCCTGGAGAGAGACGCTTTCTGCATCATCACCGAGTTCTGCGAGgacGGGGATTTGGAGTGTAAGCTGGAGCGGTTGCGTGTCTCAGGAGAAGCTCTGTCTGAGTCTCAGATCAGGGAGTGGCTCGTTCAGCTGCTGCTGGGGGTCGACTACATGCACGAGAGGCGGATTCTACACCGAGACCTGAAAACCAAGAATGTGTTCCTGAAGAAGAACGCTGTAAAGATCGGTGATTTTGGCGTGTCATGCCTGCTGATGGGGTCATGTGACTTCGCCACCACGTTCACAGGAACGCCTTACTACATGAGTCCTGAGGCTCTCGGTCACCAAGGTTACGACTCCAAATCAGACATGTGgtctttAGGCTGCATCCTGTATGAGATGTGCTGCCTGAAACATGCCTTTGAGGGACACAACTTCCTGTCCGTGGTGCAGAAGATCATGGAAAGTTCCACGCCGTCCCTGTCGGAGAAATACTCACCAGAGCTCAACTCCTTAATGCAGAGgatgtTGGAGAAATCCCCGTCACTGAGGGTTTCCGCAGCTGAAGCTCTGAGCAGTAGCGTTATTAAGGAGCTGACTCAGtgtgtgaagCAGCAGCTCTCGGAGGGGACGGCGGGGGACGACAGAGACGCGTCTCACATCGCTAGCGTGCTGCAGAAGAAAGTGCACCTGCAGACGCTGAGGGAAAGGTCAGAGGTCGAGAAGATGAGTCCTCGAGAGCGGATGAGGCTGAGGAAGCAGCAGGCCGCTGACGACAGAGCCAGGAAGCTAAAtctgaacgtgtgtgtgtgtgtgtgtgtgtgttggtttgtgtTTATGTACAGACATATTGTGGaggagaaatataaagaaaatcagCAGCGCATGATTGAGCTCCGGTCCAAAAACTTCCAAAGAGTCAGCATCAACGTTCTCACTGAGAAAGCTGAGGACACAGTGAGACAAATCCAGCCAATCAGACAAGAGGATGCTACACCAAGCAGCCATCCTGGACCAATGGGAGAGCAGCTCACTGAACATGacatcCCTGAGGACCCTCAGGCAGCAGAAGTGTATTATTCTGAAGATGGATTCGAGTCGTGTTCAGATGAAGATGATTTCTGCTCTGAAGTTCCCACACAggACAGTGATCTGGAGGCCGTGGTGCGACACATGGAGGACGTTCTGGGGGAGAAATCTGTTGcaggtGAAGCTGACGGAGGTGTGTCTCACGCGGGTGTGTATGGACCGCTCAGCATCAACAGCACCATGGATTAATTCTAATCCAGAACATGAGAGAAGtacagtgGCGTTTCCTTCACCGTAGGGACccgagacaggaggagagagtgtgattggtggagagagagaagtgattCAGGAAGATGGAGGCAGTGAAGATGGAGACAGAGTGCGTTTAGTGTGGAGGGGGCTGATTACCAGCAGCCTTGATTACCTTCAATAATCAGCTACATGCACtgctttactgtgtgtgtg
>XM_034297959.1
CCCCTTTAAGCGTAACCATGACAACGAGGCCAACACGCGGAAGCTGCACACGCTTAACTCACAGGTGTAGATTTGGACACCATGCCTAAATTCCGTGAACTGGAAGCTGAgtctcctcatcatcctcatcatcctcatcctcatcatcctcatcctcatcctctgcTGGCCAACAGATACGTCATTCAGCAGAGACTCGGCAGGGGAAGTTTCGGCACTGTGTATCTCATTGAAGACACAAAAACGACAATCAGAGACAAACTTAAAGTTCTGAAGGAGATCCCAGTTGGAGATTTGAAGCCGGATGAGACGGTGAAGGCCACACAGGAAGCTCAGCTCCTCTCGCAGCTCCATCATCCAGCCATCCTCAGATTCTACACCAGCTTCCTGGAGAGAGACGCTTTCTGCATCATCACCGAGTTCTGCGAGgacGGGGATTTGGAGTGTAAGCTGGAGCGGTTGCGTGTCTCAGGAGAAGCTCTGTCTGAGTCTCAGATCAGGGAGTGGCTCGTTCAGCTGCTGCTGGGGGTCGACTACATGCACGAGAGGCGGATTCTACACCGAGACCTGAAAACCAAGAATGTGTTCCTGAAGAAGAACGCTGTAAAGATCGGTGATTTTGGCGTGTCATGCCTGCTGATGGGGTCATGTGACTTCGCCACCACGTTCACAGGAACGCCTTACTACATGAGTCCTGAGGCTCTCGGTCACCAAGGTTACGACTCCAAATCAGACATGTGgtctttAGGCTGCATCCTGTATGAGATGTGCTGCCTGAAACATGCCTTTGAGGGACACAACTTCCTGTCCGTGGTGCAGAAGATCATGGAAAGTTCCACGCCGTCCCTGTCGGAGAAATACTCACCAGAGCTCAACTCCTTAATGCAGAGgatgtTGGAGAAATCCCCGTCACTGAGGGTTTCCGCAGCTGAAGCTCTGAGCAGTAGCGTTATTAAGGAGCTGACTCAGtgtgtgaagCAGCAGCTCTCGGAGGGGACGGCGGGGGACGACAGAGACGCGTCTCACATCGCTAGCGTGCTGCAGAAGAAAGTGCACCTGCAGACGCTGAGGGAAAGGTCAGAGGTCGAGAAGATGAGTCCTCGAGAGCGGATGAGGCTGAGGAAGCAGCAGGCCGCTGACGACAGAGCCAGGAAGCTAAAtctgaacgtgtgtgtgtgtgtgtgtgtgtgttggtttgtgtTTATGTACAGACATATTGTGGaggagaaatataaagaaaatcagCAGCGCATGATTGAGCTCCGGTCCAAAAACTTCCAAAGAGTCAGCATCAACGTTCTCACTGAGAAAGCTGAGGACACAGTGAGACAAATCCAGCCAATCAGACAAGAGGATGCTACACCAAGCAGCCATCCTGGACCAATGGGAGAGCAGCTCACTGAACATGacatcCCTGAGGACCCTCAGGCAGCAGAAGTGTATTATTCTGAAGATGGATTCGAGTCGTGTTCAGATGAAGATGATTTCTGCTCTGAAGTTCCCACACAggACAGTGATCTGGAGGCCGTGGTGCGACACATGGAGGACGTTCTGGGGGAGAAATCTGTTGcaggtGAAGCTGACGGAGGTGTGTCTCACGCGGGTGTGTATGGACCGCTCAGCATCAACAGCACCATGGATTAATTCTAATCCAGAACATGAGAGAAGGTGTCAGTCTGGGTGACTCTGTGCCCATGATGGCTTCAcgttcctgttcttggctgacagcgtggaacccgatgtggtgttctgctgttgtagctcaccCACCTCAAGGTTCCacatgttctgagatgcttttctgctcaccacggttgtaaagagtagttatttgactTAGTGTAGccttctgatctctctcatcagcacaGCATTGCCACTTGCAGAACTTCAGCTCACTGGacgtttttcgcaccattctgtgta
>XM_034297960.1
CCCCTTTAAGCGTAACCATGACAACGAGGCCAACACGCGGAAGCTGCACACGCTTAACTCACAGGTGTAGATTTGGACACCATGCCTAAATTCCGTGAACTGGAAGCTGAgtctcctcatcatcctcatcatcctcatcctcatcatcctcatcctcatcctctgcTGGCCAACAGATACGTCATTCAGCAGAGACTCGGCAGGGGAAGTTTCGGCACTGTGTATCTCATTGAAGACACAAAAACGACAATCAGAGACAAACTTAAAGTTCTGAAGGAGATCCCAGTTGGAGATTTGAAGCCGGATGAGACGGTGAAGGCCACACAGGAAGCTCAGCTCCTCTCGCAGCTCCATCATCCAGCCATCCTCAGATTCTACACCAGCTTCCTGGAGAGAGACGCTTTCTGCATCATCACCGAGTTCTGCGAGgacGGGGATTTGGAGTGTAAGCTGGAGCGGTTGCGTGTCTCAGGAGAAGCTCTGTCTGAGTCTCAGATCAGGGAGTGGCTCGTTCAGCTGCTGCTGGGGGTCGACTACATGCACGAGAGGCGGATTCTACACCGAGACCTGAAAACCAAGAATGTGTTCCTGAAGAAGAACGCTGTAAAGATCGGTGATTTTGGCGTGTCATGCCTGCTGATGGGGTCATGTGACTTCGCCACCACGTTCACAGGAACGCCTTACTACATGAGTCCTGAGGCTCTCGGTCACCAAGGTTACGACTCCAAATCAGACATGTGgtctttAGGCTGCATCCTGTATGAGATGTGCTGCCTGAAACATGCCTTTGAGGGACACAACTTCCTGTCCGTGGTGCAGAAGATCATGGAAAGTTCCACGCCGTCCCTGTCGGAGAAATACTCACCAGAGCTCAACTCCTTAATGCAGAGgatgtTGGAGAAATCCCCGTCACTGAGGGTTTCCGCAGCTGAAGCTCTGAGCAGTAGCGTTATTAAGGAGCTGACTCAGtgtgtgaagCAGCAGCTCTCGGAGGGGACGGCGGGGGACGACAGAGACGCGTCTCACATCGCTAGCGTGCTGCAGAAGAAAGTGCACCTGCAGACGCTGAGGGAAAGGTCAGAGGTCGAGAAGATGAGTCCTCGAGAGCGGATGAGGCTGAGGAAGCAGCAGGCCGCTGACGACAGAGCCAGGAAGCTAAAtctgaacgtgtgtgtgtgtgtgtgtgtgtgttggtttgtgtTTATGTACAGACATATTGTGGaggagaaatataaagaaaatcagCAGCGCATGATTGAGCTCCGGTCCAAAAACTTCCAAAGAGTCAGCATCAACGTTCTCACTGAGAAAGCTGAGGACACAGTGAGACAAATCCAGCCAATCAGACAAGAGGATGCTACACCAAGCAGCCATCCTGGACCAATGGGAGAGCAGCTCACTGAACATGacatcCCTGAGGACCCTCAGGCAGCAGAAGTGTATTATTCTGAAGATGGATTCGAGTCGTGTTCAGATGAAGATGATTTCTGCTCTGAAGTTCCCACACAggACAGTGATCTGGAGGCCGTGGTGCGACACATGGAGGACGTTCTGGGGGAGAAATCTGTTGcaggtGAAGCTGACGGAGGTGTGTCTCACGCGGGTGTGTATGGACCGCTCAGCATCAACAGCACCATGGATTAATTCTAATCCAGAACATGAGAGAAGtgGCGTTTCCTTCACCGTAGGGACccgagacaggaggag
>XR_004576952.1
CCCCTTTAAGCGTAACCATGACAACGAGGCCAACACGCGGAAGCTGCACACGCTTAACTCACAGGTGTAGATTTGGACACCATGCCTAAATTCCGTGAACTGGAAGCTGAgtctcctcatcatcctcatcatcctcatcctcatcatcctcatcctcatcctctgcTGGCCAACAGATACGTCATTCAGCAGAGACTCGGCAGGGGAAGTTTCGGCACTGTGTATCTCATTGAAGACACAAAAACGACAATCAGAGACAAACTTAAAGTTCTGAAGGAGATCCCAGTTGGAGATTTGAAGCCGGATGAGACGGTGAAGGCCACACAGGAAGCTCAGCTCCTCTCGCAGCTCCATCATCCAGCCATCCTCAGATTCTACACCAGCTTCCTGGAGAGAGACGCTTTCTGCATCATCACCGAGTTCTGCGAGgacGGGGATTTGGAGTGTAAGCTGGAGCGGTTGCGTGTCTCAGGAGAAGCTCTGTCTGAGTCTCAGATCAGGGAGTGGCTCGTTCAGCTGCTGCTGGGGGTCGACTACATGCACGAGAGGCGGATTCTACACCGAGACCTGAAAACCAAGAATGTGTTCCTGAAGAAGAACGCTGTAAAGATCGGTGATTTTGGCGTGTCATGCCTGCTGATGGGGTCATGTGACTTCGCCACCACGTTCACAGGAACGCCTTACTACATGAGTCCTGAGGCTCTCGGTCACCAAGGTTACGACTCCAAATCAGACATGTGgtctttAGGCTGCATCCTGTATGAGATGTGCTGCCTGAAACATGCCTTTGAGGGACACAACTTCCTGTCCGTGGTGCAGAAGATCATGGAAAGTTCCACGCCGTCCCTGTCGGAGAAATACTCACCAGAGCTCAACTCCTTAATGCAGAGgatgtTGGAGAAATCCCCGTCACTGAGGGTTTCCGCAGCTGAAGCTCTGAGCAGTAGCGTTATTAAGGAGCTGACTCAGtgtgtgaagCAGCAGCTCTCGGAGGGGACGGCGGGGGACGACAGAGACGCGTCTCACATCGCTAGCGTGCTGCAGAAGAAAGTGCACCTGCAGACGCTGAGGGAAAGGTCAGAGGTCGAGAAGATGAGTCCTCGAGAGCGGATGAGGCTGAGGAAGCAGCAGGCCGCTGACGACAGAGCCAGGAAGCTAAAtctgaacgtgtgtgtgtgtgtgtgtgtgtgttggtttgtgtTTATGTACAGACATATTGTGGaggagaaatataaagaaaatcagCAGCGCATGATTGAGCTCCGGTCCAAAAACTTCCAAAGAGTCAGCATCAACGTTCTCACTGAGAAAGCTGAGGACACAGTGAGACAAATCCAGCCAATCAGACAAGAGGATGCTACACCAAGCAGCCATCCTGGACCAATGGGAGAGCAGCTCACTGAACATGacatcCCTGAGGACCCTCAGGCAGCAGAAGTGTATTATTCTGAAGATGGATTCGAGTCGTGTTCAGATGAAGATGATTTCTGCTCTGAAGTTCCCACACAggACAGTGATCTGGAGGCCGTGGTGCGACACATGGAGGACGTTCTGGGGGAGAAATCTGTTGcaggtGAAGCTGACGGAGGTGTGTCTCACGCGGGTGTGTATGGACCGCTCAGCATCAACAGCACCATGGATTAATTCTAATCCAGAACATGAGAGAAGTTGAGATTTAGAGGCTggcaggaggagagagggatgaagaaGAGGAGTAAAGAGAGGATAGAAACAGtacagtgGCGTTTCCTTCACCGTAGGGACccgagacaggaggagagagtgtgattggtggagagagagaagtgattCAGGAAGATGGAGGCAGTGAAGATGGAGACAGAGTGCGTTTAGTGTGGAGGGGGCTGATTACCAGCAGCCTTGATTACCTTCAATAATCAGCTACATGCACtgctttactgtgtgtgtg

Function

NR:

description
PREDICTED: serine/threonine-protein kinase Nek11-like

GO: NA

KEGG:

id description
K20880 NEK11; NIMA (never in mitosis gene a)-related kinase 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911508.2 False 1747 mRNA 0.52 16 1047583 1102117
XM_034297958.1 False 1863 mRNA 0.51 16 1047583 1102117
XM_034297959.1 False 1926 mRNA 0.51 16 1043313 1102117
XM_034297960.1 False 1707 mRNA 0.52 16 1047734 1102117
XR_004576952.1 True 1930 misc_RNA 0.51 17 1047583 1102117

Neighbor

gene id symbol gene type direction distance location
si:dkey-11p23.7 siglec15 coding downstream 123404 915919 ~ 919909 (-)
LOC113525074 NA coding downstream 141051 897326 ~ 902262 (-)
ubxn11 ubxn11 coding downstream 186580 847835 ~ 856733 (-)
mtdhb LOC108256290 coding downstream 211392 820622 ~ 831921 (-)
scn1ba LOC108256230,LOC108437383 coding downstream 272340 752642 ~ 770973 (-)
LOC117595783 LOC108256266,LOC108256277,LOC108256270,LOC108256272,LOC108256276,LOC108261760,LOC108261539 coding upstream 23787 1125904 ~ 1234282 (-)
LOC113533061 LOC108256273 coding upstream 171276 1273393 ~ 1275839 (-)
LOC113532917 NA coding upstream 179329 1281446 ~ 1285879 (-)
LOC113532999 LOC108261539 coding upstream 184872 1286989 ~ 1295529 (-)
elp6 elp6 coding upstream 240862 1342979 ~ 1346644 (-)
G324649 NA non-coding downstream 87921 880609 ~ 955392 (-)
G324650 NA non-coding downstream 161027 881639 ~ 882286 (-)
G324622 cep85 non-coding downstream 200691 842266 ~ 842622 (-)
G324616 NA non-coding downstream 228980 812339 ~ 814333 (-)
G324602 NA non-coding downstream 250826 791946 ~ 792487 (-)
G324726 NA non-coding upstream 17654 1119771 ~ 1186077 (-)
G324729 LOC108256269,LOC108256268,LOC108256164,LOC108256276 non-coding upstream 24727 1126844 ~ 1127617 (-)
G324731 NA non-coding upstream 42469 1144586 ~ 1169331 (-)
LOC117595768 NA non-coding upstream 566985 1669102 ~ 1674907 (-)
G324970 NA non-coding upstream 621893 1724010 ~ 1724764 (-)
G324579 NA other downstream 315679 726627 ~ 727634 (-)
dyrk1b dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 other downstream 468042 549060 ~ 575271 (-)
smarcc1a smarcc1,LOC107600486,LOC107666814,LOC107686050 other downstream 588490 374199 ~ 454823 (-)
slc4a7 slc4a7,LOC108256322,LOC107686077,LOC107666816 other downstream 646740 350738 ~ 396573 (-)
herpud2 LOC108256328,LOC108431059,LOC107666842 other downstream 711552 234506 ~ 331761 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other upstream 192748 1294865 ~ 1342071 (-)
G324748 NA other upstream 268359 1370476 ~ 1371029 (-)
kif13a kif13a other upstream 301147 1403264 ~ 1451000 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other upstream 454899 1557016 ~ 1568506 (-)
G325145 mtmr11 other upstream 986142 2088259 ~ 2097435 (-)

Expression


Co-expression Network