cmtm7 (cmtm7,cklf7,LOC106606093)


Basic Information

Item Value
gene id cmtm7
gene name cmtm7,cklf7,LOC106606093
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 923165 ~ 930865 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911514.2
TGTAGGCTAGTTGCACTTGTAGATTCTATGAAGCGGTTTAGGCTTTAGCCGGTGTCACGCCCCAGCAAAATTACAGCAGGACTGTGGTTTAGAGAAGAGCgaacaaaATGTCGCACAGGATTGTTACGACCACATCCACGACTACGACTACGACTACGACTTCAGATGGAGGATTTCTAAACATCGGCTATTGTCGCTCTTTTCCTGGATTATTAAAACTCGCCCAAGTGGTGACCCTAATGATCGCCTTCCTGTGTGTCCATTGCGCCCCCAGATGGACAGATTACGATGCGTTTCGCTACTTTGAGGTGGTCACATTGTGGTTCCTCTTCGCCTTCCTCATCTTCTTCCTCATGTACGTGTTCAGGCTGCAGAGCAAACTCCCCTGCATTAACTGGACGCTGACGGTGATTTTTTCATTACATCTTGGGCACCATCCTGGTCTTCATCGCCTCCATCGTAGCAGCAGTGAAGAGCTACAGCGTCTCTGCTCTCATAGCTGGATCTgttTTTGGCTTTATTGCGACTTTTCTTCTTGCGGTCAGTTTATGGATGTCGTACAGCGTCACGTGCGGCTCTCAGCAAACCAGTATCGGTGTGTAACGGGACCCAATCCAAAGTTACAAGAAGGAATTAATTTGATCAGTTACTGTATCGAGTGCCTCAAATGTGCTGAGAGTTCAGCCCTGTCCTGAACGCTGCAGTTTATACGATTTGGAAACATGCTCCCtaaccctacattcacactagcaggcGACGAGTCGCTTGTGTCACTTGGAGTTCGTCTCTTGTGGACGTGTAGCGAATGCTGCTGTTGTCACGTGCTGTGGGCGTGGCCCGTCCAGCAAGAACCATCTCCTCTCGCTGTCGCGCGTTTGCGTAGAAAAGGattgtcgcttgctagtgtgaaggTAGGATAAAGCTCTAAGTGTCACACAGAGAAGGTGACGCATCAGGATTGACCGCAGACTGAACCGACATGTTAGTGAatgttgattttattatattcattattgcAGTATTGAAATTCCTGATTAGAGAATTTAAAGCTCAGATTCAATATTTTATACACAAGGTTTTTCCTATTTAAGTCTTATTCACTGCAGCTTTGAGGTGGGTTAAAATATagaatgaatcttttttttattccatttatatcaaagagtgtttatttattttttaaagaactgatgatgatgatgatgatgagatagTTTTGCTTAAATTTAGAAGTATAGAGCTGGATTTGGAGCGATTCACAGTGTTATTATCAACTATTCAAAGAGCAATATTTCCTTTTTGTGAACTTAACTCACTGTGTAAAgtgatttctttctctctctgtatccctttttttttttagtaaacacAATCCTACATTTTACTGTGCTGACTCTAGTggcaaaaatggaaaaatataataaatatgcagTTGTT
>XM_026911515.2
TTGACACACATAGCACttccaggacacacacacacacacacacacacacactgattctcATATAAAAtccttaactttttttttttaaaggaacaaaATGTCGCACAGGATTGTTACGACCACATCCACGACTACGACTACGACTACGACTTCAGATGGAGGATTTCTAAACATCGGCTATTGTCGCTCTTTTCCTGGATTATTAAAACTCGCCCAAGTGGTGACCCTAATGATCGCCTTCCTGTGTGTCCATTGCGCCCCCAGATGGACAGATTACGATGCGTTTCGCTACTTTGAGGTGGTCACATTGTGGTTCCTCTTCGCCTTCCTCATCTTCTTCCTCATGTACGTGTTCAGGCTGCAGAGCAAACTCCCCTGCATTAACTGGACGCTGACGGAGTTTTTTCATTACATCTTGGGCACCATCCTGGTCTTCATCGCCTCCATCGTAGCAGCAGTGAAGAGCTACAGCGTCTCTGCTCTCATAGCTGGATCTgttTTTGGCTTTATTGCGACTTTTCTTCTTGCGGTCAGTTTATGGATGTCGTACAGCGTCACGTGCGGCTCTCAGCAAACCAGTATCGGTGTGTAACGGGACCCAATCCAAAGTTACAAGAAGGAATTAATTTGATCAGTTACTGTATCGAGTGCCTCAAATGTGCTGAGAGTTCAGCCCTGTCCTGAACGCTGCAGTTTATACGATTTGGAAACATGCTCCCtaaccctacattcacactagcaggcGACGAGTCGCTTGTGTCACTTGGAGTTCGTCTCTTGTGGACGTGTAGCGAATGCTGCTGTTGTCACGTGCTGTGGGCGTGGCCCGTCCAGCAAGAACCATCTCCTCTCGCTGTCGCGCGTTTGCGTAGAAAAGGattgtcgcttgctagtgtgaaggTAGGATAAAGCTCTAAGTGTCACACAGAGAAGGTGACGCATCAGGATTGACCGCAGACTGAACCGACATGTTAGTGAatgttgattttattatattcattattgcAGTATTGAAATTCCTGATTAGAGAATTTAAAGCTCAGATTCAATATTTTATACACAAGGTTTTTCCTATTTAAGTCTTATTCACTGCAGCTTTGAGGTGGGTTAAAATATagaatgaatcttttttttattccatttatatcaaagagtgtttatttattttttaaagaactgatgatgatgatgatgatgagatagTTTTGCTTAAATTTAGAAGTATAGAGCTGGATTTGGAGCGATTCACAGTGTTATTATCAACTATTCAAAGAGCAATATTTCCTTTTTGTGAACTTAACTCACTGTGTAAAgtgatttctttctctctctgtatccctttttttttttagtaaacacAATCCTACATTTTACTGTGCTGACTCTAGTggcaaaaatggaaaaatataataaatatgcagTTGTT

Function

symbol description
cmtm7 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CMTM7 (CKLF like MARVEL transmembrane domain containing 7).

NR:

description
PREDICTED: CKLF-like MARVEL transmembrane domain-containing protein 7

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911514.2 True 1437 mRNA 0.43 6 923165 930865
XM_026911515.2 False 1426 mRNA 0.42 5 923272 930865

Neighbor

gene id symbol gene type direction distance location
LOC117595801 NA coding upstream 8915 908628 ~ 914250 (+)
rpp25l LOC108256289 coding upstream 16461 904463 ~ 906704 (+)
atp2c1 atp2c1,LOC107666823,LOC107592020,LOC107668304,LOC107600500 coding upstream 29563 858110 ~ 893602 (+)
cep85 cep85 coding upstream 79603 831845 ~ 843562 (+)
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding upstream 107020 806641 ~ 816145 (+)
cmtm6 NA coding downstream 3289 934154 ~ 955393 (+)
LOC113525078 LOC108256274,LOC108256268,LOC108256164 coding downstream 172874 1103739 ~ 1124181 (+)
LOC117595784 LOC108256266,LOC108256164 coding downstream 207414 1138279 ~ 1166958 (+)
LOC113541446 LOC108256266 coding downstream 254655 1185520 ~ 1187361 (+)
ptpn23a ptpn23,ptpn23a coding downstream 366011 1296876 ~ 1310714 (+)
G324216 NA non-coding upstream 169722 749451 ~ 753443 (+)
G324197 NA non-coding upstream 209364 713395 ~ 713801 (+)
G324160 NA non-coding upstream 315622 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 323995 598410 ~ 599170 (+)
G324125 NA non-coding upstream 334256 585179 ~ 588909 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 380046 1310911 ~ 1315115 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 398782 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 408663 1339528 ~ 1368639 (+)
G324305 NA non-coding downstream 410260 1341125 ~ 1342780 (+)
G324328 NA non-coding downstream 447681 1378546 ~ 1378940 (+)
psmc4 psmc4,LOC107719110 other upstream 116637 774289 ~ 806528 (+)
G324206 NA other upstream 174690 745673 ~ 748475 (+)
G324123 NA other upstream 288120 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 313156 607612 ~ 610009 (+)
G324143 NA other upstream 365026 557415 ~ 558139 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other downstream 25719 956584 ~ 1010223 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other downstream 187403 1118268 ~ 1163614 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 968761 1899626 ~ 1919710 (+)
bola1 bola1,LOC107592543 other downstream 1211327 2142192 ~ 2144525 (+)
LOC113533074 LOC108256184 other downstream 1273981 2204846 ~ 2215410 (+)

Expression


Co-expression Network